Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX2Q9NPC8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 AC007613.1-201ENST00000572811 2597 ntBASIC20.21■□□□□ 0.83
SIX2Q9NPC8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 MFAP1P1-201ENST00000442257 1255 ntBASIC20.21■□□□□ 0.83
SIX2Q9NPC8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX2Q9NPC8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.2■□□□□ 0.83
SIX2Q9NPC8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AL354751.1-201ENST00000412768 1863 ntBASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 SLC25A1P4-201ENST00000567977 778 ntBASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.2■□□□□ 0.82
SIX2Q9NPC8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 KRT8P45-201ENST00000414328 1447 ntBASIC20.19■□□□□ 0.82
SIX2Q9NPC8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 AC008556.1-201ENST00000610908 2040 ntBASIC20.19■□□□□ 0.82
SIX2Q9NPC8 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms