Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.45■□□□□ 0.7
HLA-CQ95604 MTDHP3-201ENST00000594186 672 ntBASIC19.45■□□□□ 0.7
HLA-CQ95604 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.45■□□□□ 0.7
HLA-CQ95604 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-CQ95604 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.45■□□□□ 0.7
HLA-CQ95604 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-CQ95604 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.45■□□□□ 0.7
HLA-CQ95604 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.45■□□□□ 0.7
HLA-CQ95604 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-CQ95604 ZNF815P-204ENST00000434898 1737 ntBASIC19.45■□□□□ 0.7
HLA-CQ95604 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-CQ95604 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-CQ95604 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.44■□□□□ 0.7
HLA-CQ95604 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.44■□□□□ 0.7
HLA-CQ95604 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.44■□□□□ 0.7
HLA-CQ95604 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.44■□□□□ 0.7
HLA-CQ95604 MIR3180-4-201ENST00000582223 153 ntBASIC19.44■□□□□ 0.7
HLA-CQ95604 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.44■□□□□ 0.7
HLA-CQ95604 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HLA-CQ95604 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.44■□□□□ 0.7
HLA-CQ95604 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.44■□□□□ 0.7
HLA-CQ95604 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HLA-CQ95604 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.44■□□□□ 0.7
HLA-CQ95604 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.44■□□□□ 0.7
HLA-CQ95604 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-CQ95604 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HLA-CQ95604 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.43■□□□□ 0.7
HLA-CQ95604 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HLA-CQ95604 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-CQ95604 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.43■□□□□ 0.7
HLA-CQ95604 TREX1-205ENST00000625293 1783 ntBASIC19.43■□□□□ 0.7
HLA-CQ95604 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-CQ95604 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-CQ95604 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HLA-CQ95604 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HLA-CQ95604 AC034105.1-201ENST00000563488 319 ntBASIC19.43■□□□□ 0.7
HLA-CQ95604 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-CQ95604 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-CQ95604 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.43■□□□□ 0.7
HLA-CQ95604 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.42■□□□□ 0.7
HLA-CQ95604 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HLA-CQ95604 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.42■□□□□ 0.7
HLA-CQ95604 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.42■□□□□ 0.7
HLA-CQ95604 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.42■□□□□ 0.7
HLA-CQ95604 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HLA-CQ95604 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-CQ95604 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.41■□□□□ 0.7
HLA-CQ95604 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.41■□□□□ 0.7
HLA-CQ95604 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.41■□□□□ 0.7
HLA-CQ95604 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 AC244107.1-201ENST00000442033 332 ntBASIC19.41■□□□□ 0.7
HLA-CQ95604 DNAJB3-202ENST00000449667 1266 ntBASIC19.41■□□□□ 0.7
HLA-CQ95604 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
HLA-CQ95604 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HLA-CQ95604 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.41■□□□□ 0.7
HLA-CQ95604 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.41■□□□□ 0.7
HLA-CQ95604 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-CQ95604 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms