Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.63e-7■■□□□ 11.4
DDX55Q8NHQ9 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.92■□□□□ 0.33e-7■■□□□ 11.4
DDX55Q8NHQ9 WFS1-201ENST00000226760 3640 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.34e-6■■□□□ 11.4
DDX55Q8NHQ9 WFS1-202ENST00000503569 3255 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.444e-6■■□□□ 11.4
DDX55Q8NHQ9 WFS1-205ENST00000507765 3655 ntTSL 210.3□□□□□ -0.764e-6■■□□□ 11.4
DDX55Q8NHQ9 PCSK9-201ENST00000302118 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.392e-8■■□□□ 11.4
DDX55Q8NHQ9 PCSK9-202ENST00000490692 3891 ntTSL 212.38□□□□□ -0.432e-8■■□□□ 11.4
DDX55Q8NHQ9 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.06■□□□□ 0.963e-45■■□□□ 11.4
DDX55Q8NHQ9 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.356e-11■■□□□ 11.4
DDX55Q8NHQ9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.478e-26■■□□□ 11.4
DDX55Q8NHQ9 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.092e-8■■□□□ 11.4
DDX55Q8NHQ9 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.258e-26■■□□□ 11.4
DDX55Q8NHQ9 HECTD3-205ENST00000486132 2385 ntTSL 1 (best)12.66□□□□□ -0.382e-8■■□□□ 11.4
DDX55Q8NHQ9 COX7A2L-207ENST00000482463 1918 ntTSL 212.41□□□□□ -0.428e-26■■□□□ 11.4
DDX55Q8NHQ9 HECTD3-201ENST00000372168 2530 ntTSL 2 BASIC12.37□□□□□ -0.432e-8■■□□□ 11.4
DDX55Q8NHQ9 COX7A2L-206ENST00000468711 516 ntTSL 310.98□□□□□ -0.658e-26■■□□□ 11.4
DDX55Q8NHQ9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.77■■■□□ 2.525e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-226ENST00000566835 1565 ntTSL 230.45■■■□□ 2.475e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.74■■■□□ 2.195e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-230ENST00000568194 2116 ntTSL 1 (best)25.45■■□□□ 1.665e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-212ENST00000563067 1646 ntTSL 523.72■■□□□ 1.395e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.035e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.015e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.015e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-221ENST00000565330 1403 ntTSL 220.95■□□□□ 0.945e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-231ENST00000568542 1865 ntTSL 1 (best)19.44■□□□□ 0.75e-7■■□□□ 11.4
DDX55Q8NHQ9 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.59■□□□□ 0.255e-7■■□□□ 11.4
DDX55Q8NHQ9 SNRPD3-205ENST00000468770 544 ntTSL 1 (best)8.85□□□□□ -0.992e-8■□□□□ 11.3
DDX55Q8NHQ9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.412e-14■□□□□ 11.3
DDX55Q8NHQ9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.447e-8■□□□□ 11.3
DDX55Q8NHQ9 G6PC3-204ENST00000588558 1718 ntTSL 1 (best)21.39■■□□□ 1.012e-14■□□□□ 11.3
DDX55Q8NHQ9 G6PC3-202ENST00000585361 1572 ntTSL 220.64■□□□□ 0.92e-14■□□□□ 11.3
DDX55Q8NHQ9 G6PC3-205ENST00000590253 844 ntTSL 519.43■□□□□ 0.72e-14■□□□□ 11.3
DDX55Q8NHQ9 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.152e-23■□□□□ 11.3
DDX55Q8NHQ9 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.96□□□□□ -0.017e-8■□□□□ 11.3
DDX55Q8NHQ9 DDRGK1-203ENST00000470203 480 ntTSL 314.5□□□□□ -0.097e-8■□□□□ 11.3
DDX55Q8NHQ9 ZFR-201ENST00000265069 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.167e-8■□□□□ 11.3
DDX55Q8NHQ9 DDRGK1-204ENST00000496781 865 ntTSL 1 (best)13.84□□□□□ -0.197e-8■□□□□ 11.3
DDX55Q8NHQ9 DCAF11-212ENST00000558624 2627 ntTSL 213.58□□□□□ -0.242e-23■□□□□ 11.3
DDX55Q8NHQ9 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.367e-8■□□□□ 11.3
DDX55Q8NHQ9 CX3CL1-201ENST00000006053 3321 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.677e-8■□□□□ 11.3
DDX55Q8NHQ9 CX3CL1-202ENST00000563383 3313 ntTSL 5 BASIC10.69□□□□□ -0.77e-8■□□□□ 11.3
DDX55Q8NHQ9 FKBP1A-208ENST00000474726 551 ntTSL 37.75□□□□□ -1.179e-9■□□□□ 11.3
DDX55Q8NHQ9 ZFR-202ENST00000502988 2184 ntTSL 1 (best)5.58□□□□□ -1.527e-8■□□□□ 11.3
DDX55Q8NHQ9 ZFR-206ENST00000510369 1551 ntTSL 1 (best)5.18□□□□□ -1.587e-8■□□□□ 11.3
DDX55Q8NHQ9 ZFR-207ENST00000514356 3109 ntTSL 24.5□□□□□ -1.697e-8■□□□□ 11.3
DDX55Q8NHQ9 FKBP4-207ENST00000544366 287 ntTSL 34.3□□□□□ -1.727e-8■□□□□ 11.3
DDX55Q8NHQ9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.948e-32■□□□□ 11.3
DDX55Q8NHQ9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC29.28■■■□□ 2.285e-22■□□□□ 11.3
DDX55Q8NHQ9 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.51■■■□□ 2.155e-22■□□□□ 11.3
DDX55Q8NHQ9 TPI1-202ENST00000396705 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.075e-22■□□□□ 11.3
DDX55Q8NHQ9 TPI1-209ENST00000535434 1587 ntTSL 2 BASIC13.23□□□□□ -0.295e-22■□□□□ 11.3
DDX55Q8NHQ9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.692e-13■□□□□ 11.3
DDX55Q8NHQ9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.022e-23■□□□□ 11.3
DDX55Q8NHQ9 GMPR-203ENST00000543191 675 ntTSL 212.28□□□□□ -0.442e-23■□□□□ 11.3
DDX55Q8NHQ9 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.31■□□□□ 0.367e-10■□□□□ 11.3
DDX55Q8NHQ9 MACROD1-202ENST00000538042 264 ntTSL 213.32□□□□□ -0.281e-7■□□□□ 11.3
DDX55Q8NHQ9 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.048e-16■□□□□ 11.3
DDX55Q8NHQ9 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC12.88□□□□□ -0.358e-16■□□□□ 11.3
DDX55Q8NHQ9 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.216e-27■□□□□ 11.3
DDX55Q8NHQ9 CCNI-208ENST00000515468 636 ntTSL 36.14□□□□□ -1.436e-27■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.7■■□□□ 1.544e-9■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.284e-9■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.154e-9■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-204ENST00000589168 2125 ntTSL 220.24■□□□□ 0.834e-9■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.2■□□□□ 0.834e-9■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.91■□□□□ 0.34e-9■□□□□ 11.3
DDX55Q8NHQ9 SYNGR2-209ENST00000592456 3036 nt12.78□□□□□ -0.364e-9■□□□□ 11.3
DDX55Q8NHQ9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC29.48■■■□□ 2.312e-7■□□□□ 11.3
DDX55Q8NHQ9 GNB1-207ENST00000472614 708 ntTSL 227.45■■□□□ 1.985e-25■□□□□ 11.3
DDX55Q8NHQ9 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.75■■□□□ 1.395e-25■□□□□ 11.3
DDX55Q8NHQ9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.095e-25■□□□□ 11.3
DDX55Q8NHQ9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.015e-25■□□□□ 11.3
DDX55Q8NHQ9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.842e-7■□□□□ 11.3
DDX55Q8NHQ9 MLST8-207ENST00000562352 939 ntTSL 315.65■□□□□ 0.16e-7■□□□□ 11.3
DDX55Q8NHQ9 MLST8-222ENST00000565687 1135 ntTSL 515.48■□□□□ 0.076e-7■□□□□ 11.3
DDX55Q8NHQ9 ECI1-204ENST00000563029 776 ntTSL 231.91■■■□□ 2.72e-7■□□□□ 11.3
DDX55Q8NHQ9 ECI1-205ENST00000563447 965 ntTSL 219.87■□□□□ 0.772e-7■□□□□ 11.3
DDX55Q8NHQ9 CYBA-207ENST00000566534 1006 ntTSL 516.85■□□□□ 0.292e-13■□□□□ 11.3
DDX55Q8NHQ9 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.133e-45■□□□□ 11.3
DDX55Q8NHQ9 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.413e-45■□□□□ 11.3
DDX55Q8NHQ9 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.273e-45■□□□□ 11.3
DDX55Q8NHQ9 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.455e-7■□□□□ 11.3
DDX55Q8NHQ9 RNASE1-204ENST00000412779 896 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.335e-7■□□□□ 11.3
DDX55Q8NHQ9 RNASE1-201ENST00000340900 878 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.55e-7■□□□□ 11.3
DDX55Q8NHQ9 RNASE1-203ENST00000397970 769 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.625e-7■□□□□ 11.3
DDX55Q8NHQ9 RNASE1-205ENST00000555698 655 ntTSL 3 BASIC10.84□□□□□ -0.675e-7■□□□□ 11.3
DDX55Q8NHQ9 CTSB-222ENST00000531551 1855 ntTSL 1 (best)20.79■□□□□ 0.922e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.742e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.672e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.612e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.62e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.452e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-203ENST00000420692 2230 ntTSL 217.4■□□□□ 0.382e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.342e-23■□□□□ 11.3
DDX55Q8NHQ9 CTSB-211ENST00000526481 660 ntTSL 517.09■□□□□ 0.332e-23■□□□□ 11.3
DDX55Q8NHQ9 RNA5SP141-201ENST00000364543 120 ntBASIC9.62□□□□□ -0.871e-21■□□□□ 11.3
DDX55Q8NHQ9 TRA2A-207ENST00000486934 417 ntTSL 26.9□□□□□ -1.35e-42■□□□□ 11.3
DDX55Q8NHQ9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.441e-8■□□□□ 11.3
DDX55Q8NHQ9 ACTN4-204ENST00000440400 3180 ntTSL 514.66□□□□□ -0.061e-8■□□□□ 11.3
Retrieved 100 of 15,504 protein–RNA pairs in 148.5 ms