RNA–Protein interactions for RNA: ENST00000006053.6

CX3CL1-201, Transcript of C-X3-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CX3CL1, Length 3,321 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1-201ENST00000006053 NISCHQ9Y2I1 1504 aa20.79■□□□□ 0.92
CX3CL1-201ENST00000006053 SHROOM4Q9ULL8 1493 aa18.24■□□□□ 0.51
CX3CL1-201ENST00000006053 SUPT5HO00267 1087 aaKnown RBP18.03■□□□□ 0.48
CX3CL1-201ENST00000006053 DCAF8L2P0C7V8 631 aa17.83■□□□□ 0.44
CX3CL1-201ENST00000006053 ZCCHC6Q5VYS8 1495 aaKnown RBP17.61■□□□□ 0.41
CX3CL1-201ENST00000006053 CHIC1Q5VXU3 224 aa17.53■□□□□ 0.4
CX3CL1-201ENST00000006053 MYO15BQ96JP2 1530 aa17.5■□□□□ 0.39
CX3CL1-201ENST00000006053 HRCP23327 699 aa17.46■□□□□ 0.39
CX3CL1-201ENST00000006053 CCDC180Q9P1Z9 1646 aa17.4■□□□□ 0.38
CX3CL1-201ENST00000006053 PCGF6Q9BYE7 350 aa17.39■□□□□ 0.37
CX3CL1-201ENST00000006053 PPARGC1BQ86YN6 1023 aaKnown RBP17.18■□□□□ 0.34
CX3CL1-201ENST00000006053 LOC105371045A0A1W2PR82 267 aa17.13■□□□□ 0.33
CX3CL1-201ENST00000006053 PELP1Q8IZL8 1130 aaKnown RBP17.08■□□□□ 0.32
CX3CL1-201ENST00000006053 DCAF1Q9Y4B6 1507 aa16.99■□□□□ 0.31
CX3CL1-201ENST00000006053 TRIM26Q12899 539 aaPredicted RBP16.88■□□□□ 0.29
CX3CL1-201ENST00000006053 ABCC9O60706 1549 aa16.78■□□□□ 0.28
CX3CL1-201ENST00000006053 FAM9AQ8IZU1 332 aaPredicted RBP16.71■□□□□ 0.27
CX3CL1-201ENST00000006053 TRIM41Q8WV44 630 aa16.7■□□□□ 0.26
CX3CL1-201ENST00000006053 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
CX3CL1-201ENST00000006053 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
CX3CL1-201ENST00000006053 MYT1Q01538 1121 aa16.6■□□□□ 0.25
CX3CL1-201ENST00000006053 ZEB1P37275 1124 aaPredicted RBP16.59■□□□□ 0.25
CX3CL1-201ENST00000006053 SCRIBQ14160 1630 aa16.59■□□□□ 0.25
CX3CL1-201ENST00000006053 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
CX3CL1-201ENST00000006053 CECR2Q9BXF3 1484 aa16.3■□□□□ 0.2
CX3CL1-201ENST00000006053 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
CX3CL1-201ENST00000006053 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.26■□□□□ 0.19
CX3CL1-201ENST00000006053 MROH2BQ7Z745 1585 aa16.23■□□□□ 0.19
CX3CL1-201ENST00000006053 PABPN1Q86U42 306 aaKnown RBP eCLIP16.23■□□□□ 0.19
CX3CL1-201ENST00000006053 CCER1Q8TC90 406 aaPredicted RBP16.22■□□□□ 0.19
CX3CL1-201ENST00000006053 TTBK1Q5TCY1 1321 aaPredicted RBP16.18■□□□□ 0.18
CX3CL1-201ENST00000006053 WIZO95785 1651 aa16.16■□□□□ 0.18
CX3CL1-201ENST00000006053 NACADO15069 1562 aa16.1■□□□□ 0.17
CX3CL1-201ENST00000006053 ACIN1Q9UKV3 1341 aaKnown RBP16.04■□□□□ 0.16
CX3CL1-201ENST00000006053 NEUROD1Q13562 356 aa16.03■□□□□ 0.16
CX3CL1-201ENST00000006053 DIEXFQ68CQ4 756 aaKnown RBP16.02■□□□□ 0.15
CX3CL1-201ENST00000006053 BAZ1AQ9NRL2 1556 aaPredicted RBP15.99■□□□□ 0.15
CX3CL1-201ENST00000006053 ABCC8Q09428 1581 aa15.96■□□□□ 0.15
CX3CL1-201ENST00000006053 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
CX3CL1-201ENST00000006053 CENPBP07199 599 aaPredicted RBP15.93■□□□□ 0.14
CX3CL1-201ENST00000006053 EIF4G1Q04637 1599 aaKnown RBP15.92■□□□□ 0.14
CX3CL1-201ENST00000006053 GTF3C3Q9Y5Q9 886 aa15.92■□□□□ 0.14
CX3CL1-201ENST00000006053 CEP162Q5TB80 1403 aa15.92■□□□□ 0.14
CX3CL1-201ENST00000006053 UBTFP17480 764 aaKnown RBP15.92■□□□□ 0.14
CX3CL1-201ENST00000006053 SOGA1O94964 1423 aa15.89■□□□□ 0.13
CX3CL1-201ENST00000006053 WRNQ14191 1432 aaPredicted RBP eCLIP15.87■□□□□ 0.13
CX3CL1-201ENST00000006053 CSRNP3Q8WYN3 585 aa15.84■□□□□ 0.13
CX3CL1-201ENST00000006053 TOP2AP11388 1531 aaKnown RBP15.84■□□□□ 0.13
CX3CL1-201ENST00000006053 TNIKQ9UKE5 1360 aa15.83■□□□□ 0.12
CX3CL1-201ENST00000006053 RUSC2Q8N2Y8 1516 aa15.8■□□□□ 0.12
CX3CL1-201ENST00000006053 ZNF316A6NFI3 1004 aaPredicted RBP15.79■□□□□ 0.12
CX3CL1-201ENST00000006053 YTHDC1Q96MU7 727 aaKnown RBP15.78■□□□□ 0.12
CX3CL1-201ENST00000006053 SMARCA2P51531 1590 aa15.78■□□□□ 0.12
CX3CL1-201ENST00000006053 SMARCA4P51532 1647 aa15.76■□□□□ 0.11
CX3CL1-201ENST00000006053 HNRNPUL2Q1KMD3 747 aaKnown RBP15.76■□□□□ 0.11
CX3CL1-201ENST00000006053 EEA1Q15075 1411 aa15.72■□□□□ 0.11
CX3CL1-201ENST00000006053 GOLGA3Q08378 1498 aa15.69■□□□□ 0.1
CX3CL1-201ENST00000006053 PRKCSHP14314 528 aaPredicted RBP15.69■□□□□ 0.1
CX3CL1-201ENST00000006053 RANGAP1P46060 587 aaPredicted RBP15.66■□□□□ 0.1
CX3CL1-201ENST00000006053 MIER1Q8N108 512 aa15.64■□□□□ 0.09
CX3CL1-201ENST00000006053 APLP2Q06481 763 aa15.62■□□□□ 0.09
CX3CL1-201ENST00000006053 CLIP1P30622 1438 aa15.58■□□□□ 0.08
CX3CL1-201ENST00000006053 BCL11AQ9H165 835 aa15.58■□□□□ 0.08
CX3CL1-201ENST00000006053 CEP164Q9UPV0 1460 aa15.56■□□□□ 0.08
CX3CL1-201ENST00000006053 UNC13AQ9UPW8 1703 aa15.54■□□□□ 0.08
CX3CL1-201ENST00000006053 VPS8Q8N3P4 1428 aa15.5■□□□□ 0.07
CX3CL1-201ENST00000006053 SYNJ1O43426 1573 aa15.5■□□□□ 0.07
CX3CL1-201ENST00000006053 RAPGEF2Q9Y4G8 1499 aa15.46■□□□□ 0.07
CX3CL1-201ENST00000006053 KIF21BO75037 1637 aa15.46■□□□□ 0.06
CX3CL1-201ENST00000006053 BAZ1BQ9UIG0 1483 aaKnown RBP15.38■□□□□ 0.05
CX3CL1-201ENST00000006053 BICRAQ9NZM4 1560 aa15.38■□□□□ 0.05
CX3CL1-201ENST00000006053 PEG3Q9GZU2 1588 aa15.34■□□□□ 0.05
CX3CL1-201ENST00000006053 ATAD2BQ9ULI0 1458 aa15.34■□□□□ 0.05
CX3CL1-201ENST00000006053 KANK4Q5T7N3 995 aaPredicted RBP15.32■□□□□ 0.04
CX3CL1-201ENST00000006053 DHX57Q6P158 1386 aaKnown RBP15.32■□□□□ 0.04
CX3CL1-201ENST00000006053 ITGAEP38570 1179 aa15.28■□□□□ 0.04
CX3CL1-201ENST00000006053 CLSPNQ9HAW4 1339 aa15.28■□□□□ 0.04
CX3CL1-201ENST00000006053 ARAP1Q96P48 1450 aa15.23■□□□□ 0.03
CX3CL1-201ENST00000006053 TOP2BQ02880 1626 aa15.22■□□□□ 0.03
CX3CL1-201ENST00000006053 SUPT16HQ9Y5B9 1047 aaKnown RBP15.22■□□□□ 0.03
CX3CL1-201ENST00000006053 PRXQ9BXM0 1461 aa15.19■□□□□ 0.02
CX3CL1-201ENST00000006053 ERICH3Q5RHP9 1530 aa15.16■□□□□ 0.02
CX3CL1-201ENST00000006053 CCNB3Q8WWL7 1395 aa15.14■□□□□ 0.01
CX3CL1-201ENST00000006053 RRBP1Q9P2E9 1410 aaKnown RBP15.14■□□□□ 0.01
CX3CL1-201ENST00000006053 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
CX3CL1-201ENST00000006053 BIVM-ERCC5R4GMW8 1640 aa15.12■□□□□ 0.01
CX3CL1-201ENST00000006053 KCNH8Q96L42 1107 aa15.12■□□□□ 0.01
CX3CL1-201ENST00000006053 ERICH6Q7L0X2 663 aa15.09■□□□□ 0.01
CX3CL1-201ENST00000006053 ANP32EQ9BTT0 268 aa15.09■□□□□ 0.01
CX3CL1-201ENST00000006053 CUX1P39880 1505 aa15.08■□□□□ 0
CX3CL1-201ENST00000006053 RAB3GAP2Q9H2M9 1393 aa15.07■□□□□ 0
CX3CL1-201ENST00000006053 ARHGAP35Q9NRY4 1499 aa15.07■□□□□ 0
CX3CL1-201ENST00000006053 BCANQ96GW7 911 aa15.05■□□□□ -0
CX3CL1-201ENST00000006053 DNAJC5BQ9UF47 199 aa15.05■□□□□ -0
CX3CL1-201ENST00000006053 TSHZ2Q9NRE2 1034 aa15.04■□□□□ -0
CX3CL1-201ENST00000006053 DDX10Q13206 875 aaKnown RBP15.04■□□□□ -0
CX3CL1-201ENST00000006053 CUX2O14529 1486 aa15.03■□□□□ -0
CX3CL1-201ENST00000006053 FAM50AQ14320 339 aaKnown RBP15.03■□□□□ -0
CX3CL1-201ENST00000006053 ATP1B4Q9UN42 357 aaPredicted RBP15.02■□□□□ -0
CX3CL1-201ENST00000006053 SIN3AQ96ST3 1273 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms