Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 AL160286.2-201ENST00000567150 934 ntBASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 KRASP1-201ENST00000407852 552 ntBASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
CLIP4Q8N3C7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms