Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.12■□□□□ 0.33
USP43Q70EL4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.12■□□□□ 0.33
USP43Q70EL4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.12■□□□□ 0.33
USP43Q70EL4 AC008687.6-201ENST00000596318 630 ntBASIC17.12■□□□□ 0.33
USP43Q70EL4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.12■□□□□ 0.33
USP43Q70EL4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.12■□□□□ 0.33
USP43Q70EL4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 ANO7L1-203ENST00000602586 1720 ntBASIC17.12■□□□□ 0.33
USP43Q70EL4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
USP43Q70EL4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP43Q70EL4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USP43Q70EL4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.11■□□□□ 0.33
USP43Q70EL4 AL162741.1-201ENST00000565563 1558 ntBASIC17.11■□□□□ 0.33
USP43Q70EL4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.11■□□□□ 0.33
USP43Q70EL4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.11■□□□□ 0.33
USP43Q70EL4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 CDV3P1-201ENST00000471403 739 ntBASIC17.11■□□□□ 0.33
USP43Q70EL4 RNA5SP413-201ENST00000516373 109 ntBASIC17.11■□□□□ 0.33
USP43Q70EL4 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.11■□□□□ 0.33
USP43Q70EL4 AC098934.4-201ENST00000564127 592 ntBASIC17.11■□□□□ 0.33
USP43Q70EL4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.11■□□□□ 0.33
USP43Q70EL4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP43Q70EL4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.11■□□□□ 0.33
USP43Q70EL4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.11■□□□□ 0.33
USP43Q70EL4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
USP43Q70EL4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 AC141586.5-201ENST00000624546 2050 ntBASIC17.11■□□□□ 0.33
USP43Q70EL4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.11■□□□□ 0.33
USP43Q70EL4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP43Q70EL4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.1■□□□□ 0.33
USP43Q70EL4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP43Q70EL4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
USP43Q70EL4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
USP43Q70EL4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.1■□□□□ 0.33
USP43Q70EL4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.1■□□□□ 0.33
USP43Q70EL4 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.1■□□□□ 0.33
USP43Q70EL4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USP43Q70EL4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.1■□□□□ 0.33
USP43Q70EL4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USP43Q70EL4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP43Q70EL4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP43Q70EL4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP43Q70EL4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USP43Q70EL4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP43Q70EL4 AC046158.3-201ENST00000624947 2558 ntBASIC17.09■□□□□ 0.33
USP43Q70EL4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.09■□□□□ 0.33
USP43Q70EL4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP43Q70EL4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USP43Q70EL4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
USP43Q70EL4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.09■□□□□ 0.33
USP43Q70EL4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.09■□□□□ 0.33
USP43Q70EL4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.09■□□□□ 0.33
USP43Q70EL4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP43Q70EL4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP43Q70EL4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP43Q70EL4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP43Q70EL4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USP43Q70EL4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms