Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 KRT8P11-201ENST00000409686 1436 ntBASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 AC069544.1-201ENST00000609399 999 ntBASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
LRIF1Q5T3J3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 KRT8P3-201ENST00000519669 1449 ntBASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRIF1Q5T3J3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 PCDHB18P-201ENST00000524813 2368 ntBASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 MIR935-201ENST00000401179 91 ntBASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 AP003097.1-201ENST00000530657 1135 ntBASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRIF1Q5T3J3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.73■□□□□ 0.43
LRIF1Q5T3J3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.73■□□□□ 0.43
LRIF1Q5T3J3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRIF1Q5T3J3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
LRIF1Q5T3J3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRIF1Q5T3J3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms