Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.32□□□□□ -0.28
RPL39P62891 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPL39P62891 MKRN4P-201ENST00000444706 1521 ntBASIC13.32□□□□□ -0.28
RPL39P62891 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.32□□□□□ -0.28
RPL39P62891 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPL39P62891 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
RPL39P62891 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.32□□□□□ -0.28
RPL39P62891 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RPL39P62891 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPL39P62891 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RPL39P62891 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPL39P62891 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPL39P62891 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC13.31□□□□□ -0.28
RPL39P62891 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 MIR638-201ENST00000385237 100 ntBASIC13.31□□□□□ -0.28
RPL39P62891 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 LSM12P1-201ENST00000411836 588 ntBASIC13.31□□□□□ -0.28
RPL39P62891 APTR-203ENST00000430801 583 ntTSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 AC093787.1-201ENST00000450396 207 ntBASIC13.31□□□□□ -0.28
RPL39P62891 NME1-207ENST00000480143 964 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 OR10C1-204ENST00000622521 1039 ntBASIC13.31□□□□□ -0.28
RPL39P62891 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
RPL39P62891 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPL39P62891 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RPL39P62891 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 ESPNP-201ENST00000270691 2015 ntBASIC13.3□□□□□ -0.28
RPL39P62891 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RPL39P62891 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC13.3□□□□□ -0.28
RPL39P62891 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.3□□□□□ -0.28
RPL39P62891 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.3□□□□□ -0.28
RPL39P62891 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
RPL39P62891 AL162741.1-201ENST00000565563 1558 ntBASIC13.3□□□□□ -0.28
RPL39P62891 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC13.3□□□□□ -0.28
RPL39P62891 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC13.3□□□□□ -0.28
RPL39P62891 AC016769.1-201ENST00000409132 1010 ntBASIC13.3□□□□□ -0.28
RPL39P62891 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC13.3□□□□□ -0.28
RPL39P62891 LGR4-203ENST00000480977 492 ntTSL 2 BASIC13.3□□□□□ -0.28
RPL39P62891 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC13.3□□□□□ -0.28
RPL39P62891 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC13.3□□□□□ -0.28
RPL39P62891 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC13.3□□□□□ -0.28
RPL39P62891 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
RPL39P62891 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC13.3□□□□□ -0.28
RPL39P62891 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RPL39P62891 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPL39P62891 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms