Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CDH6P55285 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.59■□□□□ 0.73
CDH6P55285 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.59■□□□□ 0.73
CDH6P55285 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
CDH6P55285 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.59■□□□□ 0.73
CDH6P55285 HEIH-201ENST00000623091 1652 ntBASIC19.59■□□□□ 0.73
CDH6P55285 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDH6P55285 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDH6P55285 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDH6P55285 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDH6P55285 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDH6P55285 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.58■□□□□ 0.73
CDH6P55285 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.58■□□□□ 0.73
CDH6P55285 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CDH6P55285 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CDH6P55285 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.58■□□□□ 0.72
CDH6P55285 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.58■□□□□ 0.72
CDH6P55285 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 AC116562.2-201ENST00000507042 360 ntBASIC19.58■□□□□ 0.72
CDH6P55285 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CDH6P55285 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.58■□□□□ 0.72
CDH6P55285 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CDH6P55285 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.58■□□□□ 0.72
CDH6P55285 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CDH6P55285 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.58■□□□□ 0.72
CDH6P55285 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
CDH6P55285 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.57■□□□□ 0.72
CDH6P55285 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CDH6P55285 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.57■□□□□ 0.72
CDH6P55285 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.57■□□□□ 0.72
CDH6P55285 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.57■□□□□ 0.72
CDH6P55285 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CDH6P55285 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CDH6P55285 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.57■□□□□ 0.72
CDH6P55285 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CDH6P55285 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.57■□□□□ 0.72
CDH6P55285 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.57■□□□□ 0.72
CDH6P55285 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDH6P55285 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.57■□□□□ 0.72
CDH6P55285 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.57■□□□□ 0.72
CDH6P55285 AC104581.1-202ENST00000635932 2618 ntBASIC19.56■□□□□ 0.72
CDH6P55285 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.56■□□□□ 0.72
CDH6P55285 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.56■□□□□ 0.72
CDH6P55285 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.56■□□□□ 0.72
CDH6P55285 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CDH6P55285 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
CDH6P55285 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.56■□□□□ 0.72
CDH6P55285 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.56■□□□□ 0.72
CDH6P55285 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.56■□□□□ 0.72
CDH6P55285 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CDH6P55285 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CDH6P55285 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.56■□□□□ 0.72
CDH6P55285 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
CDH6P55285 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDH6P55285 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.56■□□□□ 0.72
CDH6P55285 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.55■□□□□ 0.72
CDH6P55285 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDH6P55285 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CDH6P55285 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDH6P55285 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDH6P55285 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDH6P55285 KRT8P32-201ENST00000512863 1461 ntBASIC19.55■□□□□ 0.72
CDH6P55285 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.55■□□□□ 0.72
CDH6P55285 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms