Protein–RNA interactions for Protein: P35914

HMGCL, Hydroxymethylglutaryl-CoA lyase, mitochondrial, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLP35914 HMGA1P5-201ENST00000412453 271 ntBASIC18.73■□□□□ 0.59
HMGCLP35914 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGCLP35914 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.73■□□□□ 0.59
HMGCLP35914 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGCLP35914 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGCLP35914 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGCLP35914 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.73■□□□□ 0.59
HMGCLP35914 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGCLP35914 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.73■□□□□ 0.59
HMGCLP35914 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HMGCLP35914 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGCLP35914 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGCLP35914 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 WWOX-216ENST00000569818 525 ntBASIC18.72■□□□□ 0.59
HMGCLP35914 MIR3180-5-201ENST00000583743 153 ntBASIC18.72■□□□□ 0.59
HMGCLP35914 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HMGCLP35914 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
HMGCLP35914 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGCLP35914 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGCLP35914 AL357033.4-201ENST00000617703 1807 ntBASIC18.72■□□□□ 0.59
HMGCLP35914 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGCLP35914 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HMGCLP35914 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HMGCLP35914 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGCLP35914 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HMGCLP35914 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGCLP35914 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 AL512604.3-201ENST00000569583 964 ntBASIC18.71■□□□□ 0.59
HMGCLP35914 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HMGCLP35914 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
HMGCLP35914 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGCLP35914 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGCLP35914 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGCLP35914 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGCLP35914 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGCLP35914 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGCLP35914 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGCLP35914 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGCLP35914 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGCLP35914 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HMGCLP35914 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGCLP35914 AC211429.1-201ENST00000415277 523 ntBASIC18.7■□□□□ 0.58
HMGCLP35914 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.7■□□□□ 0.58
HMGCLP35914 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGCLP35914 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGCLP35914 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGCLP35914 CR769767.2-201ENST00000622735 460 ntBASIC18.7■□□□□ 0.58
HMGCLP35914 AC004408.2-201ENST00000623613 2777 ntBASIC18.7■□□□□ 0.58
HMGCLP35914 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HMGCLP35914 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGCLP35914 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGCLP35914 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGCLP35914 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
HMGCLP35914 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGCLP35914 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
HMGCLP35914 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGCLP35914 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGCLP35914 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGCLP35914 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms