Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DQA1P01909 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DQA1P01909 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DQA1P01909 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DQA1P01909 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HLA-DQA1P01909 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
HLA-DQA1P01909 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 AD000864.1-201ENST00000624076 2295 ntBASIC14.15□□□□□ -0.14
HLA-DQA1P01909 PKD1P5-201ENST00000532415 10291 ntBASIC14.15□□□□□ -0.14
HLA-DQA1P01909 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 NAA20-201ENST00000310450 920 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 AC027612.3-201ENST00000413684 1047 ntBASIC14.15□□□□□ -0.14
HLA-DQA1P01909 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 CDV3P1-201ENST00000471403 739 ntBASIC14.15□□□□□ -0.14
HLA-DQA1P01909 AC079140.4-201ENST00000507448 529 ntBASIC14.15□□□□□ -0.14
HLA-DQA1P01909 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 AC243732.1-201ENST00000612648 864 ntBASIC14.15□□□□□ -0.14
HLA-DQA1P01909 SP2-202ENST00000613139 908 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DQA1P01909 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
HLA-DQA1P01909 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
HLA-DQA1P01909 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 AL645608.8-201ENST00000606034 2086 ntBASIC14.14□□□□□ -0.15
HLA-DQA1P01909 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms