Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM13O60858 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM13O60858 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
TRIM13O60858 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM13O60858 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM13O60858 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.55■□□□□ 0.56
TRIM13O60858 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM13O60858 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM13O60858 PRKY-204ENST00000533551 1019 ntBASIC18.55■□□□□ 0.56
TRIM13O60858 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.55■□□□□ 0.56
TRIM13O60858 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 C1QL1P1-201ENST00000568105 661 ntBASIC18.55■□□□□ 0.56
TRIM13O60858 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.55■□□□□ 0.56
TRIM13O60858 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
TRIM13O60858 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
TRIM13O60858 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM13O60858 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM13O60858 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
TRIM13O60858 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM13O60858 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM13O60858 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM13O60858 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.54■□□□□ 0.56
TRIM13O60858 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.54■□□□□ 0.56
TRIM13O60858 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.54■□□□□ 0.56
TRIM13O60858 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM13O60858 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM13O60858 UNC93B4-201ENST00000505679 747 ntBASIC18.54■□□□□ 0.56
TRIM13O60858 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
TRIM13O60858 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM13O60858 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.54■□□□□ 0.56
TRIM13O60858 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM13O60858 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM13O60858 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.54■□□□□ 0.56
TRIM13O60858 RCC2P6-201ENST00000526625 1557 ntBASIC18.54■□□□□ 0.56
TRIM13O60858 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM13O60858 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
TRIM13O60858 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM13O60858 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM13O60858 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM13O60858 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM13O60858 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM13O60858 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM13O60858 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM13O60858 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM13O60858 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRIM13O60858 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM13O60858 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 AC098934.4-201ENST00000564127 592 ntBASIC18.53■□□□□ 0.56
TRIM13O60858 AL138781.1-201ENST00000566567 1274 ntBASIC18.53■□□□□ 0.56
TRIM13O60858 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM13O60858 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM13O60858 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.53■□□□□ 0.56
TRIM13O60858 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM13O60858 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms