Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 KRT16P5-201ENST00000455284 522 ntBASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPSF4LA6NMK7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 ESRRAP1-201ENST00000400596 1257 ntBASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.38■□□□□ 0.37
CPSF4LA6NMK7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPSF4LA6NMK7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms