Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 AC009947.2-201ENST00000444014 672 ntBASIC19.7■□□□□ 0.74
USP3Q9Y6I4 DUX4L26-201ENST00000489078 1255 ntBASIC19.7■□□□□ 0.74
USP3Q9Y6I4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP3Q9Y6I4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.69■□□□□ 0.74
USP3Q9Y6I4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 YBX1P2-201ENST00000489612 999 ntBASIC19.69■□□□□ 0.74
USP3Q9Y6I4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 AL031432.5-201ENST00000641059 760 ntBASIC19.69■□□□□ 0.74
USP3Q9Y6I4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 AC036111.1-201ENST00000533973 1582 ntBASIC19.69■□□□□ 0.74
USP3Q9Y6I4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP3Q9Y6I4 CROCCP3-202ENST00000420820 1947 ntBASIC19.68■□□□□ 0.74
USP3Q9Y6I4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 AC011558.1-201ENST00000623459 338 ntBASIC19.68■□□□□ 0.74
USP3Q9Y6I4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 HEIH-201ENST00000623091 1652 ntBASIC19.68■□□□□ 0.74
USP3Q9Y6I4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.68■□□□□ 0.74
USP3Q9Y6I4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP3Q9Y6I4 MIR1224-201ENST00000408193 85 ntBASIC19.67■□□□□ 0.74
USP3Q9Y6I4 AK4P3-201ENST00000418260 669 ntBASIC19.67■□□□□ 0.74
USP3Q9Y6I4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms