Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 AC116562.2-201ENST00000507042 360 ntBASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS9D1Q9Y2B5 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 AC020763.4-201ENST00000623414 4170 ntBASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 AC096733.2-201ENST00000609937 1394 ntBASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 AL049637.2-201ENST00000641778 930 ntBASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 AC090340.1-201ENST00000620778 4980 ntBASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS9D1Q9Y2B5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 KRT8P32-201ENST00000512863 1461 ntBASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 MIR718-201ENST00000390190 70 ntBASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 AC008040.2-201ENST00000461049 708 ntBASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS9D1Q9Y2B5 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VPS9D1Q9Y2B5 MESTP1-201ENST00000404287 994 ntBASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms