Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS28Q9UK41 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS28Q9UK41 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS28Q9UK41 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS28Q9UK41 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS28Q9UK41 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 IRX1P1-201ENST00000438849 1838 ntBASIC19.37■□□□□ 0.69
VPS28Q9UK41 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.37■□□□□ 0.69
VPS28Q9UK41 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS28Q9UK41 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS28Q9UK41 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 AC073508.3-201ENST00000619697 1419 ntBASIC19.36■□□□□ 0.69
VPS28Q9UK41 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS28Q9UK41 FEM1AP3-201ENST00000403722 1741 ntBASIC19.36■□□□□ 0.69
VPS28Q9UK41 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
VPS28Q9UK41 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS28Q9UK41 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS28Q9UK41 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.35■□□□□ 0.69
VPS28Q9UK41 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS28Q9UK41 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms