Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.7■□□□□ 0.74
CDX2Q99626 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.7■□□□□ 0.74
CDX2Q99626 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.7■□□□□ 0.74
CDX2Q99626 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.7■□□□□ 0.74
CDX2Q99626 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.7■□□□□ 0.74
CDX2Q99626 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.7■□□□□ 0.74
CDX2Q99626 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.7■□□□□ 0.74
CDX2Q99626 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX2Q99626 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CDX2Q99626 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX2Q99626 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.69■□□□□ 0.74
CDX2Q99626 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.69■□□□□ 0.74
CDX2Q99626 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.69■□□□□ 0.74
CDX2Q99626 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CDX2Q99626 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CDX2Q99626 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.69■□□□□ 0.74
CDX2Q99626 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 PAWRP1-201ENST00000451083 565 ntBASIC19.69■□□□□ 0.74
CDX2Q99626 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.69■□□□□ 0.74
CDX2Q99626 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.69■□□□□ 0.74
CDX2Q99626 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.69■□□□□ 0.74
CDX2Q99626 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.69■□□□□ 0.74
CDX2Q99626 SPCS2P1-201ENST00000561636 679 ntBASIC19.69■□□□□ 0.74
CDX2Q99626 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
CDX2Q99626 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.69■□□□□ 0.74
CDX2Q99626 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CDX2Q99626 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
CDX2Q99626 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.68■□□□□ 0.74
CDX2Q99626 KRT8P3-201ENST00000519669 1449 ntBASIC19.68■□□□□ 0.74
CDX2Q99626 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.68■□□□□ 0.74
CDX2Q99626 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CDX2Q99626 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.68■□□□□ 0.74
CDX2Q99626 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.68■□□□□ 0.74
CDX2Q99626 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CDX2Q99626 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CDX2Q99626 OR7E14P-202ENST00000530490 1290 ntBASIC19.68■□□□□ 0.74
CDX2Q99626 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.68■□□□□ 0.74
CDX2Q99626 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.68■□□□□ 0.74
CDX2Q99626 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.68■□□□□ 0.74
CDX2Q99626 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.68■□□□□ 0.74
CDX2Q99626 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 HOXB1-202ENST00000577092 1414 ntBASIC19.68■□□□□ 0.74
CDX2Q99626 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX2Q99626 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX2Q99626 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CDX2Q99626 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX2Q99626 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX2Q99626 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
CDX2Q99626 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX2Q99626 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 MIR1199-201ENST00000621445 119 ntBASIC19.67■□□□□ 0.74
CDX2Q99626 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.67■□□□□ 0.74
CDX2Q99626 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms