Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC23.08■■□□□ 1.29
USP48Q86UV5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.08■■□□□ 1.29
USP48Q86UV5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC23.08■■□□□ 1.29
USP48Q86UV5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
USP48Q86UV5 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
USP48Q86UV5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.08■■□□□ 1.29
USP48Q86UV5 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
USP48Q86UV5 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.28
USP48Q86UV5 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
USP48Q86UV5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
USP48Q86UV5 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
USP48Q86UV5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC23.08■■□□□ 1.28
USP48Q86UV5 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.07■■□□□ 1.28
USP48Q86UV5 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 AL845331.1-201ENST00000424978 1190 ntBASIC23.07■■□□□ 1.28
USP48Q86UV5 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.07■■□□□ 1.28
USP48Q86UV5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC23.07■■□□□ 1.28
USP48Q86UV5 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.07■■□□□ 1.28
USP48Q86UV5 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.07■■□□□ 1.28
USP48Q86UV5 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.07■■□□□ 1.28
USP48Q86UV5 GCSHP2-201ENST00000560971 527 ntBASIC23.07■■□□□ 1.28
USP48Q86UV5 AL160286.2-201ENST00000567150 934 ntBASIC23.07■■□□□ 1.28
USP48Q86UV5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC23.07■■□□□ 1.28
USP48Q86UV5 NPAP1P7-201ENST00000613027 823 ntBASIC23.07■■□□□ 1.28
USP48Q86UV5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
USP48Q86UV5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.07■■□□□ 1.28
USP48Q86UV5 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.07■■□□□ 1.28
USP48Q86UV5 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.07■■□□□ 1.28
USP48Q86UV5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP48Q86UV5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.07■■□□□ 1.28
USP48Q86UV5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
USP48Q86UV5 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
USP48Q86UV5 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.06■■□□□ 1.28
USP48Q86UV5 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC23.06■■□□□ 1.28
USP48Q86UV5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC23.06■■□□□ 1.28
USP48Q86UV5 STARP1-201ENST00000397973 869 ntBASIC23.06■■□□□ 1.28
USP48Q86UV5 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.06■■□□□ 1.28
USP48Q86UV5 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.06■■□□□ 1.28
USP48Q86UV5 MIR3652-201ENST00000579335 131 ntBASIC23.06■■□□□ 1.28
USP48Q86UV5 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.06■■□□□ 1.28
USP48Q86UV5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.06■■□□□ 1.28
USP48Q86UV5 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USP48Q86UV5 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
USP48Q86UV5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP48Q86UV5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.05■■□□□ 1.28
USP48Q86UV5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC23.05■■□□□ 1.28
USP48Q86UV5 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
USP48Q86UV5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
USP48Q86UV5 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.05■■□□□ 1.28
USP48Q86UV5 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.05■■□□□ 1.28
USP48Q86UV5 CKBP1-201ENST00000565489 1086 ntBASIC23.05■■□□□ 1.28
USP48Q86UV5 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
USP48Q86UV5 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.05■■□□□ 1.28
USP48Q86UV5 KRT8P8-201ENST00000434750 1448 ntBASIC23.05■■□□□ 1.28
USP48Q86UV5 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC23.05■■□□□ 1.28
USP48Q86UV5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC23.05■■□□□ 1.28
USP48Q86UV5 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP48Q86UV5 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC23.04■■□□□ 1.28
USP48Q86UV5 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.04■■□□□ 1.28
USP48Q86UV5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC23.04■■□□□ 1.28
USP48Q86UV5 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC23.04■■□□□ 1.28
USP48Q86UV5 PRELID1P1-202ENST00000567272 903 ntBASIC23.04■■□□□ 1.28
USP48Q86UV5 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms