Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 BANP-201ENST00000286122 2368 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 AP001094.4-201ENST00000579008 2176 ntBASIC11.8□□□□□ -0.52
LINC00643Q86TS7 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 CROCCP2-202ENST00000412962 2773 ntBASIC11.8□□□□□ -0.52
LINC00643Q86TS7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 ANO7L1-203ENST00000602586 1720 ntBASIC11.8□□□□□ -0.52
LINC00643Q86TS7 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00643Q86TS7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AC008741.2-201ENST00000612792 3115 ntBASIC11.79□□□□□ -0.52
LINC00643Q86TS7 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00643Q86TS7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms