Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.04■□□□□ 0.8
USP41Q3LFD5 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP41Q3LFD5 AC112497.1-201ENST00000624824 639 ntBASIC20.04■□□□□ 0.8
USP41Q3LFD5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.04■□□□□ 0.8
USP41Q3LFD5 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 SEC1P-202ENST00000473944 940 ntBASIC20.03■□□□□ 0.8
USP41Q3LFD5 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 TEX21P-204ENST00000641479 1693 ntBASIC20.03■□□□□ 0.8
USP41Q3LFD5 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP41Q3LFD5 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
USP41Q3LFD5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 ATP5G2P1-201ENST00000433580 426 ntBASIC20.02■□□□□ 0.8
USP41Q3LFD5 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP41Q3LFD5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.02■□□□□ 0.8
USP41Q3LFD5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP41Q3LFD5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
USP41Q3LFD5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP41Q3LFD5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.02■□□□□ 0.79
USP41Q3LFD5 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP41Q3LFD5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 DUSP5P1-201ENST00000441325 1139 ntBASIC20.01■□□□□ 0.79
USP41Q3LFD5 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.01■□□□□ 0.79
USP41Q3LFD5 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP41Q3LFD5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms