Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
YBX1P67809 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.39■□□□□ 0.54
YBX1P67809 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.39■□□□□ 0.54
YBX1P67809 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
YBX1P67809 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.39■□□□□ 0.54
YBX1P67809 WIZP1-201ENST00000531444 2299 ntBASIC18.39■□□□□ 0.54
YBX1P67809 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
YBX1P67809 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
YBX1P67809 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
YBX1P67809 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 CRYGFP-201ENST00000418459 633 ntBASIC18.39■□□□□ 0.53
YBX1P67809 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.39■□□□□ 0.53
YBX1P67809 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 BX088651.1-201ENST00000540551 451 ntBASIC18.39■□□□□ 0.53
YBX1P67809 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.39■□□□□ 0.53
YBX1P67809 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
YBX1P67809 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.39■□□□□ 0.53
YBX1P67809 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
YBX1P67809 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.39■□□□□ 0.53
YBX1P67809 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
YBX1P67809 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
YBX1P67809 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
YBX1P67809 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.38■□□□□ 0.53
YBX1P67809 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.38■□□□□ 0.53
YBX1P67809 AL031598.1-201ENST00000561511 1773 ntBASIC18.38■□□□□ 0.53
YBX1P67809 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.38■□□□□ 0.53
YBX1P67809 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
YBX1P67809 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
YBX1P67809 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
YBX1P67809 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.38■□□□□ 0.53
YBX1P67809 CYP2D8P-201ENST00000433633 1490 ntBASIC18.38■□□□□ 0.53
YBX1P67809 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
YBX1P67809 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.38■□□□□ 0.53
YBX1P67809 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
YBX1P67809 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.37■□□□□ 0.53
YBX1P67809 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 CKBP1-201ENST00000565489 1086 ntBASIC18.37■□□□□ 0.53
YBX1P67809 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.37■□□□□ 0.53
YBX1P67809 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms