Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 PMS2P1-201ENST00000431037 1228 ntBASIC20.19■□□□□ 0.82
COL4A4P53420 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A4P53420 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A4P53420 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
COL4A4P53420 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A4P53420 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A4P53420 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.18■□□□□ 0.82
COL4A4P53420 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A4P53420 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL4A4P53420 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A4P53420 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A4P53420 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A4P53420 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
COL4A4P53420 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A4P53420 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A4P53420 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A4P53420 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A4P53420 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A4P53420 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A4P53420 AL121912.1-201ENST00000603683 238 ntBASIC20.18■□□□□ 0.82
COL4A4P53420 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A4P53420 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A4P53420 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL4A4P53420 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A4P53420 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A4P53420 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A4P53420 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A4P53420 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A4P53420 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A4P53420 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A4P53420 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL4A4P53420 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A4P53420 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.16■□□□□ 0.82
COL4A4P53420 RNA5SP419-201ENST00000515908 135 ntBASIC20.16■□□□□ 0.82
COL4A4P53420 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A4P53420 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A4P53420 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL4A4P53420 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A4P53420 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A4P53420 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A4P53420 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A4P53420 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL4A4P53420 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.16■□□□□ 0.82
COL4A4P53420 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A4P53420 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A4P53420 AL391807.1-203ENST00000604392 2365 ntBASIC20.15■□□□□ 0.82
COL4A4P53420 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
COL4A4P53420 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 KRT18P13-201ENST00000400056 1290 ntBASIC20.15■□□□□ 0.82
COL4A4P53420 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
COL4A4P53420 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.15■□□□□ 0.82
COL4A4P53420 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.15■□□□□ 0.82
COL4A4P53420 AL121772.3-201ENST00000610840 674 ntBASIC20.15■□□□□ 0.82
COL4A4P53420 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A4P53420 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
COL4A4P53420 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A4P53420 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A4P53420 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A4P53420 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A4P53420 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A4P53420 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms