Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A2P12110 ABALON-201ENST00000629058 1903 ntBASIC18.64■□□□□ 0.58
COL6A2P12110 FZD10-202ENST00000539839 3282 ntBASIC18.64■□□□□ 0.58
COL6A2P12110 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
COL6A2P12110 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A2P12110 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
COL6A2P12110 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.64■□□□□ 0.58
COL6A2P12110 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A2P12110 AC026366.1-201ENST00000488803 879 ntBASIC18.64■□□□□ 0.57
COL6A2P12110 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A2P12110 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL6A2P12110 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A2P12110 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A2P12110 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.63■□□□□ 0.57
COL6A2P12110 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A2P12110 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL6A2P12110 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.63■□□□□ 0.57
COL6A2P12110 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A2P12110 PRSS44-201ENST00000515154 1146 ntBASIC18.63■□□□□ 0.57
COL6A2P12110 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A2P12110 AL445675.2-201ENST00000620291 557 ntBASIC18.63■□□□□ 0.57
COL6A2P12110 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A2P12110 MYC-208ENST00000641036 567 ntBASIC18.63■□□□□ 0.57
COL6A2P12110 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 KRT8P32-201ENST00000512863 1461 ntBASIC18.63■□□□□ 0.57
COL6A2P12110 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 MTMR9LP-203ENST00000426597 1545 ntBASIC18.63■□□□□ 0.57
COL6A2P12110 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A2P12110 AC126763.1-201ENST00000552015 2118 ntBASIC18.62■□□□□ 0.57
COL6A2P12110 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A2P12110 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
COL6A2P12110 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL6A2P12110 AC090192.1-201ENST00000517740 490 ntBASIC18.62■□□□□ 0.57
COL6A2P12110 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A2P12110 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A2P12110 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A2P12110 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL6A2P12110 AC020763.4-201ENST00000623414 4170 ntBASIC18.62■□□□□ 0.57
COL6A2P12110 KRT8P3-201ENST00000519669 1449 ntBASIC18.62■□□□□ 0.57
COL6A2P12110 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A2P12110 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL6A2P12110 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL6A2P12110 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
COL6A2P12110 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms