Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 AC055717.3-201ENST00000622967 595 ntBASIC17.06■□□□□ 0.32
SPTA1P02549 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.06■□□□□ 0.32
SPTA1P02549 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.06■□□□□ 0.32
SPTA1P02549 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 IGHV3-47-201ENST00000425060 335 ntBASIC17.06■□□□□ 0.32
SPTA1P02549 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 HLA-J-202ENST00000469281 1241 ntBASIC17.06■□□□□ 0.32
SPTA1P02549 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.06■□□□□ 0.32
SPTA1P02549 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.06■□□□□ 0.32
SPTA1P02549 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.06■□□□□ 0.32
SPTA1P02549 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.06■□□□□ 0.32
SPTA1P02549 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SPTA1P02549 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SPTA1P02549 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SPTA1P02549 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SPTA1P02549 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.05■□□□□ 0.32
SPTA1P02549 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.05■□□□□ 0.32
SPTA1P02549 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 AC092720.2-201ENST00000602388 1665 ntBASIC17.05■□□□□ 0.32
SPTA1P02549 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SPTA1P02549 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SPTA1P02549 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.05■□□□□ 0.32
SPTA1P02549 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.05■□□□□ 0.32
SPTA1P02549 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.05■□□□□ 0.32
SPTA1P02549 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.05■□□□□ 0.32
SPTA1P02549 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.05■□□□□ 0.32
SPTA1P02549 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SPTA1P02549 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
SPTA1P02549 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.04■□□□□ 0.32
SPTA1P02549 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.04■□□□□ 0.32
SPTA1P02549 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.04■□□□□ 0.32
SPTA1P02549 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.04■□□□□ 0.32
SPTA1P02549 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.04■□□□□ 0.32
SPTA1P02549 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.04■□□□□ 0.32
SPTA1P02549 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SPTA1P02549 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.04■□□□□ 0.32
SPTA1P02549 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SPTA1P02549 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.04■□□□□ 0.32
SPTA1P02549 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.04■□□□□ 0.32
SPTA1P02549 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.04■□□□□ 0.32
SPTA1P02549 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SPTA1P02549 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.04■□□□□ 0.32
SPTA1P02549 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SPTA1P02549 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SPTA1P02549 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.03■□□□□ 0.32
SPTA1P02549 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 MIR940-201ENST00000401276 94 ntBASIC17.03■□□□□ 0.32
SPTA1P02549 AC018712.1-201ENST00000455767 687 ntBASIC17.03■□□□□ 0.32
SPTA1P02549 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.03■□□□□ 0.32
SPTA1P02549 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.03■□□□□ 0.32
SPTA1P02549 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SPTA1P02549 AC148477.8-201ENST00000624298 468 ntBASIC17.03■□□□□ 0.32
SPTA1P02549 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.03■□□□□ 0.32
SPTA1P02549 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SPTA1P02549 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SPTA1P02549 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SPTA1P02549 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.03■□□□□ 0.32
SPTA1P02549 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms