Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB3O15347 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGB3O15347 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGB3O15347 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGB3O15347 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC15.19■□□□□ 0.02
HMGB3O15347 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
HMGB3O15347 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB3O15347 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB3O15347 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 Z98044.1-201ENST00000632503 1764 ntBASIC15.19■□□□□ 0.02
HMGB3O15347 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB3O15347 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
HMGB3O15347 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
HMGB3O15347 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HMGB3O15347 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HMGB3O15347 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB3O15347 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB3O15347 TESC-206ENST00000541210 936 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGB3O15347 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGB3O15347 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB3O15347 AL136967.2-201ENST00000623968 743 ntBASIC15.18■□□□□ 0.02
HMGB3O15347 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGB3O15347 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB3O15347 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB3O15347 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB3O15347 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB3O15347 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGB3O15347 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB3O15347 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGB3O15347 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGB3O15347 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
HMGB3O15347 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGB3O15347 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB3O15347 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB3O15347 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 AL512353.2-201ENST00000448759 1962 ntBASIC15.16■□□□□ 0.02
HMGB3O15347 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGB3O15347 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms