Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 AC021087.4-201ENST00000563761 564 ntBASIC20.06■□□□□ 0.8
SOX1O00570 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.06■□□□□ 0.8
SOX1O00570 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SOX1O00570 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX1O00570 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.06■□□□□ 0.8
SOX1O00570 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.06■□□□□ 0.8
SOX1O00570 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.05■□□□□ 0.8
SOX1O00570 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
SOX1O00570 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SOX1O00570 PLK5-205ENST00000642079 1969 ntBASIC20.05■□□□□ 0.8
SOX1O00570 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SOX1O00570 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.05■□□□□ 0.8
SOX1O00570 BCRP1-201ENST00000444246 691 ntBASIC20.05■□□□□ 0.8
SOX1O00570 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.05■□□□□ 0.8
SOX1O00570 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.05■□□□□ 0.8
SOX1O00570 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.05■□□□□ 0.8
SOX1O00570 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.05■□□□□ 0.8
SOX1O00570 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.05■□□□□ 0.8
SOX1O00570 HLA-J-201ENST00000462773 1622 ntBASIC20.05■□□□□ 0.8
SOX1O00570 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX1O00570 FEM1AP1-201ENST00000431297 1995 ntBASIC20.04■□□□□ 0.8
SOX1O00570 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.04■□□□□ 0.8
SOX1O00570 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.04■□□□□ 0.8
SOX1O00570 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.04■□□□□ 0.8
SOX1O00570 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 AC010240.3-201ENST00000607688 395 ntBASIC20.04■□□□□ 0.8
SOX1O00570 AL024507.2-201ENST00000606070 2574 ntBASIC20.04■□□□□ 0.8
SOX1O00570 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.04■□□□□ 0.8
SOX1O00570 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX1O00570 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX1O00570 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX1O00570 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SOX1O00570 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 RBM17P3-201ENST00000417687 1192 ntBASIC20.03■□□□□ 0.8
SOX1O00570 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
SOX1O00570 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.03■□□□□ 0.8
SOX1O00570 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.03■□□□□ 0.8
SOX1O00570 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 AC012676.1-201ENST00000574705 1949 ntBASIC20.03■□□□□ 0.8
SOX1O00570 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX1O00570 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SOX1O00570 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SOX1O00570 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.02■□□□□ 0.8
SOX1O00570 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
SOX1O00570 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.02■□□□□ 0.8
SOX1O00570 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SOX1O00570 AP002472.1-201ENST00000577490 586 ntBASIC20.02■□□□□ 0.8
SOX1O00570 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.02■□□□□ 0.8
SOX1O00570 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms