Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
CHKB-CPT1BH3BT56 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
CHKB-CPT1BH3BT56 TMEM179-206ENST00000616017 1645 ntBASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CHKB-CPT1BH3BT56 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms