Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC006058.3-201ENST00000606217 1069 ntBASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 AC068587.9-201ENST00000641814 219 ntBASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TCRBV7S3A2A0A539 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 MIR4651-201ENST00000582622 73 ntBASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TCRBV7S3A2A0A539 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 AC073592.3-201ENST00000625118 1834 ntBASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 AC091390.4-202ENST00000476426 537 ntBASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 NOC2LP1-202ENST00000452600 2235 ntBASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 HTR7P1-201ENST00000538670 1336 ntBASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TCRBV7S3A2A0A539 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 AC128676.1-201ENST00000454392 318 ntBASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 AC008040.2-201ENST00000461049 708 ntBASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.17■□□□□ 0.66
TCRBV7S3A2A0A539 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms