Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24■■□□□ 1.43
USP42Q9H9J4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC24■■□□□ 1.43
USP42Q9H9J4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC24■■□□□ 1.43
USP42Q9H9J4 AL023284.2-201ENST00000405850 579 ntBASIC24■■□□□ 1.43
USP42Q9H9J4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 AC009078.2-202ENST00000463353 338 ntBASIC24■■□□□ 1.43
USP42Q9H9J4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC24■■□□□ 1.43
USP42Q9H9J4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC24■■□□□ 1.43
USP42Q9H9J4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC23.99■■□□□ 1.43
USP42Q9H9J4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
USP42Q9H9J4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP42Q9H9J4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP42Q9H9J4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP42Q9H9J4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP42Q9H9J4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP42Q9H9J4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP42Q9H9J4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 TSPY19P-201ENST00000418461 509 ntBASIC23.98■■□□□ 1.43
USP42Q9H9J4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 TSPY18P-201ENST00000441642 509 ntBASIC23.98■■□□□ 1.43
USP42Q9H9J4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 AL732292.2-201ENST00000609649 430 ntBASIC23.98■■□□□ 1.43
USP42Q9H9J4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 AL031008.1-201ENST00000619963 541 ntBASIC23.98■■□□□ 1.43
USP42Q9H9J4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.98■■□□□ 1.43
USP42Q9H9J4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP42Q9H9J4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP42Q9H9J4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
USP42Q9H9J4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 EMBP1-201ENST00000458200 901 ntBASIC23.97■■□□□ 1.43
USP42Q9H9J4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 AC104692.2-201ENST00000603054 253 ntBASIC23.97■■□□□ 1.43
USP42Q9H9J4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
USP42Q9H9J4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USP42Q9H9J4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 ZNF815P-204ENST00000434898 1737 ntBASIC23.96■■□□□ 1.43
USP42Q9H9J4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 TPSP2-201ENST00000561760 610 ntBASIC23.96■■□□□ 1.43
USP42Q9H9J4 MIR3180-5-201ENST00000583743 153 ntBASIC23.96■■□□□ 1.43
USP42Q9H9J4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 AL157888.1-201ENST00000631930 593 ntBASIC23.96■■□□□ 1.43
USP42Q9H9J4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
USP42Q9H9J4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP42Q9H9J4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP42Q9H9J4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP42Q9H9J4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP42Q9H9J4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP42Q9H9J4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 MIR662-201ENST00000384847 95 ntBASIC23.95■■□□□ 1.42
USP42Q9H9J4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.95■■□□□ 1.42
USP42Q9H9J4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
USP42Q9H9J4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USP42Q9H9J4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms