Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 AL020996.1-203ENST00000536896 2307 ntBASIC20.92■□□□□ 0.94
CCDC113Q9H0I3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 CCR12P-201ENST00000446203 998 ntBASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 AC005363.2-201ENST00000618631 242 ntBASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 AC073508.3-201ENST00000619697 1419 ntBASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 AC116562.4-202ENST00000641738 218 ntBASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC113Q9H0I3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 AC093484.2-201ENST00000580996 2166 ntBASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 AC128688.1-201ENST00000487626 519 ntBASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 AL353719.1-201ENST00000566847 864 ntBASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC113Q9H0I3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC113Q9H0I3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC113Q9H0I3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.89■□□□□ 0.94
CCDC113Q9H0I3 TERF1P1-201ENST00000311003 1181 ntBASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 AC005521.1-201ENST00000393351 872 ntBASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 TSPY17P-201ENST00000450329 467 ntBASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC113Q9H0I3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 KRT18P21-201ENST00000515767 1272 ntBASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 AC010203.1-204ENST00000548782 407 ntBASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 AC010653.2-201ENST00000623505 997 ntBASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC113Q9H0I3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC113Q9H0I3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC113Q9H0I3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC113Q9H0I3 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC113Q9H0I3 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC113Q9H0I3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC113Q9H0I3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms