Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 FAM3A-212ENST00000434658 1817 ntTSL 523.55■■□□□ 1.362e-6■■■□□ 18.4
UPF1Q92900 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.79■■□□□ 1.242e-6■■■□□ 18.4
UPF1Q92900 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.78■■□□□ 1.242e-6■■■□□ 18.4
UPF1Q92900 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.032e-6■■■□□ 18.4
UPF1Q92900 FAM3A-222ENST00000621967 1901 ntTSL 221.29■■□□□ 12e-6■■■□□ 18.4
UPF1Q92900 FAM3A-221ENST00000612856 3995 ntTSL 211.94□□□□□ -0.52e-6■■■□□ 18.4
UPF1Q92900 GOSR2-215ENST00000638374 2683 ntTSL 5 BASIC10.01□□□□□ -0.811e-8■■■□□ 18.4
UPF1Q92900 C2orf82-207ENST00000476690 490 ntTSL 332.48■■■□□ 2.794e-10■■■□□ 18.4
UPF1Q92900 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.144e-8■■■□□ 18.4
UPF1Q92900 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.367e-8■■■□□ 18.4
UPF1Q92900 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.157e-8■■■□□ 18.4
UPF1Q92900 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.98□□□□□ -0.177e-8■■■□□ 18.4
UPF1Q92900 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.82□□□□□ -0.048e-7■■■□□ 18.4
UPF1Q92900 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.848e-7■■■□□ 18.4
UPF1Q92900 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.143e-10■■■□□ 18.4
UPF1Q92900 C16orf72-202ENST00000574285 10359 ntTSL 25.4□□□□□ -1.553e-10■■■□□ 18.4
UPF1Q92900 AC087190.4-201ENST00000574616 8334 ntBASIC4.58□□□□□ -1.683e-10■■■□□ 18.4
UPF1Q92900 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.083e-7■■■□□ 18.4
UPF1Q92900 PPIF-202ENST00000448165 821 ntTSL 222.4■■□□□ 1.183e-22■■■□□ 18.4
UPF1Q92900 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.229e-7■■■□□ 18.4
UPF1Q92900 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.868e-7■■■□□ 18.4
UPF1Q92900 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.288e-7■■■□□ 18.4
UPF1Q92900 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.52■□□□□ 0.088e-7■■■□□ 18.4
UPF1Q92900 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC27.71■■■□□ 2.039e-8■■■□□ 18.4
UPF1Q92900 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.12■□□□□ 0.973e-8■■■□□ 18.4
UPF1Q92900 C2orf72-203ENST00000477463 579 ntTSL 416.24■□□□□ 0.197e-14■■■□□ 18.4
UPF1Q92900 HDAC5-204ENST00000586802 3662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.623e-6■■■□□ 18.4
UPF1Q92900 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.884e-7■■■□□ 18.3
UPF1Q92900 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.324e-7■■■□□ 18.3
UPF1Q92900 TIMELESS-205ENST00000557589 2784 ntTSL 211.11□□□□□ -0.632e-6■■■□□ 18.3
UPF1Q92900 TIMELESS-201ENST00000229201 4376 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.752e-6■■■□□ 18.3
UPF1Q92900 HES6-209ENST00000450098 530 ntTSL 348.69■■■■■ 5.384e-6■■■□□ 18.3
UPF1Q92900 HES6-205ENST00000409356 528 ntTSL 2 BASIC35.94■■■■□ 3.344e-6■■■□□ 18.3
UPF1Q92900 HES6-208ENST00000436051 512 ntTSL 334.93■■■■□ 3.184e-6■■■□□ 18.3
UPF1Q92900 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.13□□□□□ -0.313e-8■■■□□ 18.3
UPF1Q92900 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.037e-11■■■□□ 18.3
UPF1Q92900 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC13.13□□□□□ -0.317e-11■■■□□ 18.3
UPF1Q92900 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.06■□□□□ 0.486e-8■■■□□ 18.3
UPF1Q92900 UCP2-204ENST00000539764 464 ntTSL 37.68□□□□□ -1.181e-10■■■□□ 18.3
UPF1Q92900 GOT2-201ENST00000245206 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.333e-9■■■□□ 18.3
UPF1Q92900 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC21.58■■□□□ 1.057e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-205ENST00000423601 584 ntTSL 320.9■□□□□ 0.947e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-206ENST00000591916 855 ntAPPRIS P1 TSL 319.62■□□□□ 0.737e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.27■□□□□ 0.677e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.67e-8■■■□□ 18.3
UPF1Q92900 RNF10-216ENST00000542438 562 ntTSL 418.51■□□□□ 0.557e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-207ENST00000454303 594 ntTSL 518.06■□□□□ 0.487e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.01■□□□□ 0.477e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-204ENST00000462157 1676 ntTSL 217.08■□□□□ 0.327e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-202ENST00000424284 1446 ntTSL 315.2■□□□□ 0.027e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-206ENST00000452752 566 ntTSL 514.4□□□□□ -0.17e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-AARSD1-203ENST00000409399 2042 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.227e-8■■■□□ 18.3
UPF1Q92900 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.277e-8■■■□□ 18.3
UPF1Q92900 PTGES3L-201ENST00000409446 1781 ntTSL 2 BASIC13.12□□□□□ -0.317e-8■■■□□ 18.3
UPF1Q92900 HAUS2-210ENST00000607467 443 ntTSL 511.11□□□□□ -0.637e-8■■■□□ 18.3
UPF1Q92900 HAUS2-203ENST00000562398 575 ntTSL 49.01□□□□□ -0.977e-8■■■□□ 18.3
UPF1Q92900 MAP4-211ENST00000462206 572 ntTSL 47.94□□□□□ -1.147e-8■■■□□ 18.3
UPF1Q92900 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.36□□□□□ -1.237e-8■■■□□ 18.3
UPF1Q92900 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC28.43■■■□□ 2.142e-8■■■□□ 18.3
UPF1Q92900 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC27.41■■□□□ 1.982e-8■■■□□ 18.3
UPF1Q92900 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC26.35■■□□□ 1.812e-8■■■□□ 18.3
UPF1Q92900 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.9■■□□□ 1.742e-8■■■□□ 18.3
UPF1Q92900 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC24.86■■□□□ 1.572e-8■■■□□ 18.3
UPF1Q92900 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.512e-8■■■□□ 18.3
UPF1Q92900 TANGO2-203ENST00000399807 2241 ntTSL 522.75■■□□□ 1.232e-8■■■□□ 18.3
UPF1Q92900 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.42■■□□□ 1.182e-8■■■□□ 18.3
UPF1Q92900 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.47■■□□□ 1.358e-8■■■□□ 18.3
UPF1Q92900 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC21.53■■□□□ 1.048e-8■■■□□ 18.3
UPF1Q92900 SCARB2-213ENST00000638680 5817 ntTSL 518.13■□□□□ 0.496e-7■■■□□ 18.3
UPF1Q92900 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.64■□□□□ 0.416e-7■■■□□ 18.3
UPF1Q92900 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.46e-7■■■□□ 18.3
UPF1Q92900 SCARB2-216ENST00000639300 4554 ntTSL 514.4□□□□□ -0.16e-7■■■□□ 18.3
UPF1Q92900 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC7.97□□□□□ -1.136e-7■■■□□ 18.3
UPF1Q92900 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.88□□□□□ -1.156e-7■■■□□ 18.3
UPF1Q92900 SCARB2-218ENST00000639715 4355 ntTSL 56.39□□□□□ -1.396e-7■■■□□ 18.3
UPF1Q92900 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.95■■□□□ 1.261e-21■■■□□ 18.3
UPF1Q92900 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.232e-6■■■□□ 18.3
UPF1Q92900 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.69■■□□□ 1.225e-7■■■□□ 18.3
UPF1Q92900 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.69■■□□□ 1.225e-7■■■□□ 18.3
UPF1Q92900 FOXP4-201ENST00000307972 3745 ntTSL 1 (best) BASIC11.55□□□□□ -0.565e-7■■■□□ 18.3
UPF1Q92900 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.219e-7■■■□□ 18.3
UPF1Q92900 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.61■■■□□ 2.493e-6■■■□□ 18.2
UPF1Q92900 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.033e-6■■■□□ 18.2
UPF1Q92900 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.93e-6■■■□□ 18.2
UPF1Q92900 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.763e-6■■■□□ 18.2
UPF1Q92900 PNKP-223ENST00000629179 811 ntTSL 419.94■□□□□ 0.783e-6■■■□□ 18.2
UPF1Q92900 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.56■□□□□ 0.43e-6■■■□□ 18.2
UPF1Q92900 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.063e-6■■■□□ 18.2
UPF1Q92900 GDI2-205ENST00000447751 834 ntTSL 310.79□□□□□ -0.682e-10■■■□□ 18.2
UPF1Q92900 STAU1-205ENST00000371802 3154 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.281e-6■■■□□ 18.2
UPF1Q92900 STAU1-203ENST00000360426 3211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.371e-6■■■□□ 18.2
UPF1Q92900 STAU1-201ENST00000340954 3334 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.591e-6■■■□□ 18.2
UPF1Q92900 STAU1-206ENST00000371828 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.711e-6■■■□□ 18.2
UPF1Q92900 STAU1-202ENST00000347458 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.741e-6■■■□□ 18.2
UPF1Q92900 STAU1-204ENST00000371792 3130 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.741e-6■■■□□ 18.2
UPF1Q92900 STAU1-207ENST00000371856 3684 ntAPPRIS P4 TSL 1 (best) BASIC9.69□□□□□ -0.861e-6■■■□□ 18.2
UPF1Q92900 STAU1-210ENST00000614381 3054 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.941e-6■■■□□ 18.2
UPF1Q92900 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.852e-7■■■□□ 18.2
UPF1Q92900 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.6□□□□□ -0.072e-7■■■□□ 18.2
UPF1Q92900 DNAJC21-206ENST00000514237 1038 ntTSL 1 (best)11.61□□□□□ -0.552e-7■■■□□ 18.2
Retrieved 100 of 15,879 protein–RNA pairs in 175 ms