Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 ZNF815P-204ENST00000434898 1737 ntBASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 KRT18P29-201ENST00000397031 1267 ntBASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 LSM12P1-201ENST00000411836 588 ntBASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 AC098934.4-201ENST00000564127 592 ntBASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 AC100791.3-201ENST00000617619 330 ntBASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.49■□□□□ 0.39
ZNF540Q8NDQ6 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 MIR4651-201ENST00000582622 73 ntBASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ZNF540Q8NDQ6 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ZNF540Q8NDQ6 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms