Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 AC104819.1-201ENST00000504587 486 ntBASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.69
SLC44A3Q8N4M1 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
SLC44A3Q8N4M1 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.33■□□□□ 0.69
SLC44A3Q8N4M1 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SLC44A3Q8N4M1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SLC44A3Q8N4M1 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 AC090616.6-201ENST00000582640 721 ntBASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 AL121912.1-201ENST00000603683 238 ntBASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.33■□□□□ 0.68
SLC44A3Q8N4M1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 MRPL3P1-201ENST00000400109 1033 ntBASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC44A3Q8N4M1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 AP000593.1-201ENST00000393668 712 ntBASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 KRT16P4-201ENST00000453883 522 ntBASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 AC005332.3-201ENST00000589904 676 ntBASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC44A3Q8N4M1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.3■□□□□ 0.68
SLC44A3Q8N4M1 AC074051.2-201ENST00000565115 352 ntBASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms