Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PPP4R4Q6NUP7 FZD10-202ENST00000539839 3282 ntBASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 AL512353.2-201ENST00000448759 1962 ntBASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 AL390719.1-204ENST00000412397 1219 ntBASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PPP4R4Q6NUP7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 PNMA6B-201ENST00000538162 1200 ntBASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 SOX15-203ENST00000570788 1093 ntBASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 HLA-B-256ENST00000639848 1089 ntBASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PPP4R4Q6NUP7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 KRT8P20-201ENST00000423953 1409 ntBASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
PPP4R4Q6NUP7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 ESRRAP1-201ENST00000400596 1257 ntBASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 AC006557.6-201ENST00000623071 864 ntBASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.08■□□□□ 0.48
PPP4R4Q6NUP7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms