Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 HOMER2P1-201ENST00000455653 964 ntBASIC18.63■□□□□ 0.57
SRP54P61011 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.63■□□□□ 0.57
SRP54P61011 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.63■□□□□ 0.57
SRP54P61011 NEK4P2-201ENST00000580004 1012 ntBASIC18.63■□□□□ 0.57
SRP54P61011 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SRP54P61011 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SRP54P61011 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.62■□□□□ 0.57
SRP54P61011 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.62■□□□□ 0.57
SRP54P61011 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.62■□□□□ 0.57
SRP54P61011 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.62■□□□□ 0.57
SRP54P61011 CR769767.2-201ENST00000622735 460 ntBASIC18.62■□□□□ 0.57
SRP54P61011 MYC-208ENST00000641036 567 ntBASIC18.62■□□□□ 0.57
SRP54P61011 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SRP54P61011 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.62■□□□□ 0.57
SRP54P61011 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.62■□□□□ 0.57
SRP54P61011 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SRP54P61011 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SRP54P61011 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.62■□□□□ 0.57
SRP54P61011 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.62■□□□□ 0.57
SRP54P61011 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SRP54P61011 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.61■□□□□ 0.57
SRP54P61011 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SRP54P61011 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.61■□□□□ 0.57
SRP54P61011 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.61■□□□□ 0.57
SRP54P61011 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SRP54P61011 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SRP54P61011 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SRP54P61011 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SRP54P61011 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SRP54P61011 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.61■□□□□ 0.57
SRP54P61011 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.61■□□□□ 0.57
SRP54P61011 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
SRP54P61011 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.61■□□□□ 0.57
SRP54P61011 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SRP54P61011 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SRP54P61011 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.61■□□□□ 0.57
SRP54P61011 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SRP54P61011 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SRP54P61011 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 AL031133.1-201ENST00000406807 723 ntBASIC18.6■□□□□ 0.57
SRP54P61011 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.6■□□□□ 0.57
SRP54P61011 AL359075.1-203ENST00000462729 1002 ntBASIC18.6■□□□□ 0.57
SRP54P61011 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.6■□□□□ 0.57
SRP54P61011 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.6■□□□□ 0.57
SRP54P61011 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.6■□□□□ 0.57
SRP54P61011 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.6■□□□□ 0.57
SRP54P61011 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.6■□□□□ 0.57
SRP54P61011 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.6■□□□□ 0.57
SRP54P61011 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 GPAT2P1-201ENST00000444924 1672 ntBASIC18.6■□□□□ 0.57
SRP54P61011 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SRP54P61011 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SRP54P61011 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SRP54P61011 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.59■□□□□ 0.57
SRP54P61011 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.59■□□□□ 0.57
SRP54P61011 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.59■□□□□ 0.57
SRP54P61011 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms