Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.31■□□□□ 0.52
FOXA1P55317 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXA1P55317 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXA1P55317 POU5F1P3-201ENST00000428824 1078 ntBASIC18.31■□□□□ 0.52
FOXA1P55317 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.31■□□□□ 0.52
FOXA1P55317 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXA1P55317 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXA1P55317 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
FOXA1P55317 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXA1P55317 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.3■□□□□ 0.52
FOXA1P55317 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.3■□□□□ 0.52
FOXA1P55317 RCC2P6-201ENST00000526625 1557 ntBASIC18.3■□□□□ 0.52
FOXA1P55317 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.3■□□□□ 0.52
FOXA1P55317 KRT16P5-201ENST00000455284 522 ntBASIC18.3■□□□□ 0.52
FOXA1P55317 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 HEIH-201ENST00000623091 1652 ntBASIC18.3■□□□□ 0.52
FOXA1P55317 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 KRT8P11-201ENST00000409686 1436 ntBASIC18.3■□□□□ 0.52
FOXA1P55317 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
FOXA1P55317 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA1P55317 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA1P55317 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXA1P55317 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXA1P55317 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXA1P55317 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
FOXA1P55317 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXA1P55317 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 KRT18P6-201ENST00000555540 1265 ntBASIC18.29■□□□□ 0.52
FOXA1P55317 AC124016.1-201ENST00000609552 612 ntBASIC18.29■□□□□ 0.52
FOXA1P55317 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
FOXA1P55317 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.29■□□□□ 0.52
FOXA1P55317 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA1P55317 MTMR9LP-203ENST00000426597 1545 ntBASIC18.28■□□□□ 0.52
FOXA1P55317 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
FOXA1P55317 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXA1P55317 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.28■□□□□ 0.52
FOXA1P55317 ESRRAP1-201ENST00000400596 1257 ntBASIC18.28■□□□□ 0.52
FOXA1P55317 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.28■□□□□ 0.52
FOXA1P55317 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.28■□□□□ 0.52
FOXA1P55317 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA1P55317 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.28■□□□□ 0.52
FOXA1P55317 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA1P55317 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms