Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.29■□□□□ 0.36
RFC3P40938 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.29■□□□□ 0.36
RFC3P40938 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 TSPY5P-201ENST00000426936 936 ntBASIC17.29■□□□□ 0.36
RFC3P40938 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.29■□□□□ 0.36
RFC3P40938 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.29■□□□□ 0.36
RFC3P40938 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.29■□□□□ 0.36
RFC3P40938 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.29■□□□□ 0.36
RFC3P40938 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 Z82202.1-201ENST00000623446 1880 ntBASIC17.29■□□□□ 0.36
RFC3P40938 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RFC3P40938 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.28■□□□□ 0.36
RFC3P40938 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
RFC3P40938 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.28■□□□□ 0.36
RFC3P40938 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
RFC3P40938 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 AL359075.1-203ENST00000462729 1002 ntBASIC17.28■□□□□ 0.36
RFC3P40938 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.28■□□□□ 0.36
RFC3P40938 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.28■□□□□ 0.36
RFC3P40938 MIR4674-201ENST00000582457 87 ntBASIC17.28■□□□□ 0.36
RFC3P40938 AC140113.3-201ENST00000605663 199 ntBASIC17.28■□□□□ 0.36
RFC3P40938 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.28■□□□□ 0.36
RFC3P40938 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.28■□□□□ 0.36
RFC3P40938 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFC3P40938 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
RFC3P40938 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.27■□□□□ 0.36
RFC3P40938 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
RFC3P40938 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.27■□□□□ 0.36
RFC3P40938 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.27■□□□□ 0.36
RFC3P40938 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.27■□□□□ 0.36
RFC3P40938 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 AC009947.2-201ENST00000444014 672 ntBASIC17.27■□□□□ 0.36
RFC3P40938 AL441883.1-201ENST00000566170 1045 ntBASIC17.27■□□□□ 0.36
RFC3P40938 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFC3P40938 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.27■□□□□ 0.36
RFC3P40938 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
RFC3P40938 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RFC3P40938 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RFC3P40938 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.26■□□□□ 0.35
RFC3P40938 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RFC3P40938 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.26■□□□□ 0.35
RFC3P40938 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.26■□□□□ 0.35
RFC3P40938 LINC01238-205ENST00000567549 1107 ntBASIC17.26■□□□□ 0.35
RFC3P40938 AL512604.3-201ENST00000569583 964 ntBASIC17.26■□□□□ 0.35
RFC3P40938 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.26■□□□□ 0.35
RFC3P40938 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
RFC3P40938 AC008622.2-201ENST00000617006 1229 ntBASIC17.26■□□□□ 0.35
RFC3P40938 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.26■□□□□ 0.35
RFC3P40938 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.26■□□□□ 0.35
RFC3P40938 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms