Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-DMBP28068 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HLA-DMBP28068 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 NBPF21P-201ENST00000425093 1451 ntBASIC14.4□□□□□ -0.1
HLA-DMBP28068 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 GCSHP5-201ENST00000443090 522 ntBASIC14.4□□□□□ -0.1
HLA-DMBP28068 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 RHOD-202ENST00000532559 538 ntTSL 3 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 PRKY-204ENST00000533551 1019 ntBASIC14.4□□□□□ -0.1
HLA-DMBP28068 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HLA-DMBP28068 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DMBP28068 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 AC090164.3-201ENST00000610780 2143 ntBASIC14.39□□□□□ -0.11
HLA-DMBP28068 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.39□□□□□ -0.11
HLA-DMBP28068 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 AC233263.1-201ENST00000578059 224 ntBASIC14.39□□□□□ -0.11
HLA-DMBP28068 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 HLA-A-209ENST00000638375 975 ntBASIC14.39□□□□□ -0.11
HLA-DMBP28068 AP006294.2-201ENST00000641667 209 ntBASIC14.39□□□□□ -0.11
HLA-DMBP28068 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DMBP28068 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DMBP28068 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms