Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A2P12110 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 AL162741.1-201ENST00000565563 1558 ntBASIC18.68■□□□□ 0.58
COL6A2P12110 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL6A2P12110 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A2P12110 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.67■□□□□ 0.58
COL6A2P12110 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL6A2P12110 KRT16P5-201ENST00000455284 522 ntBASIC18.67■□□□□ 0.58
COL6A2P12110 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A2P12110 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 Z85996.1-201ENST00000494644 937 ntBASIC18.67■□□□□ 0.58
COL6A2P12110 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.67■□□□□ 0.58
COL6A2P12110 AP003097.1-201ENST00000530657 1135 ntBASIC18.67■□□□□ 0.58
COL6A2P12110 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A2P12110 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A2P12110 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A2P12110 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL6A2P12110 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A2P12110 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A2P12110 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A2P12110 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A2P12110 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A2P12110 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A2P12110 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A2P12110 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL6A2P12110 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A2P12110 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A2P12110 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A2P12110 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A2P12110 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.66■□□□□ 0.58
COL6A2P12110 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.66■□□□□ 0.58
COL6A2P12110 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.66■□□□□ 0.58
COL6A2P12110 AC069544.1-201ENST00000609399 999 ntBASIC18.66■□□□□ 0.58
COL6A2P12110 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A2P12110 AC068587.9-201ENST00000641814 219 ntBASIC18.66■□□□□ 0.58
COL6A2P12110 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
COL6A2P12110 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A2P12110 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A2P12110 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A2P12110 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL6A2P12110 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL6A2P12110 NOC2LP1-202ENST00000452600 2235 ntBASIC18.65■□□□□ 0.58
COL6A2P12110 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A2P12110 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A2P12110 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
COL6A2P12110 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms