Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.78■□□□□ 0.44
LDB3O75112 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 AC087499.1-201ENST00000418141 1075 ntBASIC17.78■□□□□ 0.44
LDB3O75112 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.78■□□□□ 0.44
LDB3O75112 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.78■□□□□ 0.44
LDB3O75112 C2orf69P3-201ENST00000565542 1120 ntBASIC17.78■□□□□ 0.44
LDB3O75112 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.78■□□□□ 0.44
LDB3O75112 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.78■□□□□ 0.44
LDB3O75112 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.78■□□□□ 0.44
LDB3O75112 AC006333.2-201ENST00000607957 2099 ntBASIC17.78■□□□□ 0.44
LDB3O75112 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LDB3O75112 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LDB3O75112 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.77■□□□□ 0.44
LDB3O75112 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.77■□□□□ 0.44
LDB3O75112 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
LDB3O75112 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.77■□□□□ 0.44
LDB3O75112 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LDB3O75112 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.77■□□□□ 0.44
LDB3O75112 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.77■□□□□ 0.44
LDB3O75112 NAPSB-206ENST00000562112 1266 ntBASIC17.77■□□□□ 0.44
LDB3O75112 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.77■□□□□ 0.44
LDB3O75112 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.77■□□□□ 0.44
LDB3O75112 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.77■□□□□ 0.44
LDB3O75112 AC010947.1-201ENST00000623454 693 ntBASIC17.77■□□□□ 0.44
LDB3O75112 AC073912.3-201ENST00000624414 853 ntBASIC17.77■□□□□ 0.44
LDB3O75112 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.77■□□□□ 0.43
LDB3O75112 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LDB3O75112 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LDB3O75112 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.77■□□□□ 0.43
LDB3O75112 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.76■□□□□ 0.43
LDB3O75112 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.76■□□□□ 0.43
LDB3O75112 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LDB3O75112 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
LDB3O75112 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.76■□□□□ 0.43
LDB3O75112 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.76■□□□□ 0.43
LDB3O75112 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.76■□□□□ 0.43
LDB3O75112 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.76■□□□□ 0.43
LDB3O75112 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.76■□□□□ 0.43
LDB3O75112 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.76■□□□□ 0.43
LDB3O75112 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDB3O75112 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LDB3O75112 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 KRT8P3-201ENST00000519669 1449 ntBASIC17.75■□□□□ 0.43
LDB3O75112 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
LDB3O75112 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.75■□□□□ 0.43
LDB3O75112 CA15P1-201ENST00000481698 905 ntBASIC17.75■□□□□ 0.43
LDB3O75112 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.75■□□□□ 0.43
LDB3O75112 AC008622.2-201ENST00000617006 1229 ntBASIC17.75■□□□□ 0.43
LDB3O75112 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
LDB3O75112 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms