Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SSX4O60224 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.12■□□□□ 0.33
SSX4O60224 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 AC009053.2-201ENST00000563701 2365 ntBASIC17.11■□□□□ 0.33
SSX4O60224 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.11■□□□□ 0.33
SSX4O60224 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 RPS2P55-201ENST00000397318 883 ntBASIC17.11■□□□□ 0.33
SSX4O60224 ECEL1P3-201ENST00000427961 737 ntBASIC17.11■□□□□ 0.33
SSX4O60224 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SSX4O60224 AC107956.1-201ENST00000494359 873 ntBASIC17.11■□□□□ 0.33
SSX4O60224 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.11■□□□□ 0.33
SSX4O60224 REXO1L12P-201ENST00000622156 912 ntBASIC17.11■□□□□ 0.33
SSX4O60224 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SSX4O60224 HCG11-201ENST00000411553 5696 ntBASIC17.11■□□□□ 0.33
SSX4O60224 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.11■□□□□ 0.33
SSX4O60224 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.11■□□□□ 0.33
SSX4O60224 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SSX4O60224 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SSX4O60224 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.1■□□□□ 0.33
SSX4O60224 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 MIR2861-201ENST00000636310 90 ntBASIC17.1■□□□□ 0.33
SSX4O60224 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.1■□□□□ 0.33
SSX4O60224 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SSX4O60224 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SSX4O60224 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
SSX4O60224 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SSX4O60224 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.09■□□□□ 0.33
SSX4O60224 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 AC012618.2-201ENST00000428058 849 ntBASIC17.09■□□□□ 0.33
SSX4O60224 TSPY7P-201ENST00000431358 1114 ntBASIC17.09■□□□□ 0.33
SSX4O60224 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
SSX4O60224 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.09■□□□□ 0.33
SSX4O60224 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.09■□□□□ 0.33
SSX4O60224 AC233702.5-201ENST00000584107 538 ntBASIC17.09■□□□□ 0.33
SSX4O60224 AP001412.1-201ENST00000608405 714 ntBASIC17.09■□□□□ 0.33
SSX4O60224 AC110285.5-201ENST00000611501 352 ntBASIC17.09■□□□□ 0.33
SSX4O60224 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms