Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 GUSBP6-202ENST00000438529 1198 ntBASIC17.3■□□□□ 0.36
DDX28Q9NUL7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
DDX28Q9NUL7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 DUSP5P2-201ENST00000426873 1033 ntBASIC17.28■□□□□ 0.36
DDX28Q9NUL7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 TSPY6P-201ENST00000448518 926 ntBASIC17.28■□□□□ 0.36
DDX28Q9NUL7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 AC135050.7-201ENST00000624508 2218 ntBASIC17.28■□□□□ 0.36
DDX28Q9NUL7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 AC099398.1-201ENST00000567919 2776 ntBASIC17.28■□□□□ 0.36
DDX28Q9NUL7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DDX28Q9NUL7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms