Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 AC092329.2-201ENST00000598402 547 ntBASIC21.17■□□□□ 0.98
VTA1Q9NP79 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 AC093525.10-201ENST00000625130 1569 ntBASIC21.17■□□□□ 0.98
VTA1Q9NP79 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.17■□□□□ 0.98
VTA1Q9NP79 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VTA1Q9NP79 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 AL391807.1-203ENST00000604392 2365 ntBASIC21.16■□□□□ 0.98
VTA1Q9NP79 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 HOXB1-202ENST00000577092 1414 ntBASIC21.16■□□□□ 0.98
VTA1Q9NP79 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 MIR662-201ENST00000384847 95 ntBASIC21.16■□□□□ 0.98
VTA1Q9NP79 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 KRT18P23-201ENST00000435622 1283 ntBASIC21.16■□□□□ 0.98
VTA1Q9NP79 TPM4P1-201ENST00000436100 807 ntBASIC21.16■□□□□ 0.98
VTA1Q9NP79 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
VTA1Q9NP79 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VTA1Q9NP79 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.15■□□□□ 0.98
VTA1Q9NP79 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.15■□□□□ 0.98
VTA1Q9NP79 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.15■□□□□ 0.98
VTA1Q9NP79 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.15■□□□□ 0.98
VTA1Q9NP79 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.15■□□□□ 0.98
VTA1Q9NP79 MIR3652-201ENST00000579335 131 ntBASIC21.15■□□□□ 0.98
VTA1Q9NP79 AC008556.1-201ENST00000610908 2040 ntBASIC21.15■□□□□ 0.98
VTA1Q9NP79 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VTA1Q9NP79 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.15■□□□□ 0.98
VTA1Q9NP79 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VTA1Q9NP79 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.14■□□□□ 0.98
VTA1Q9NP79 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.14■□□□□ 0.98
VTA1Q9NP79 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.14■□□□□ 0.98
VTA1Q9NP79 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VTA1Q9NP79 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
VTA1Q9NP79 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VTA1Q9NP79 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VTA1Q9NP79 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
VTA1Q9NP79 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 KRT8P26-201ENST00000534154 1276 ntBASIC21.14■□□□□ 0.97
VTA1Q9NP79 AC104390.1-201ENST00000555663 520 ntBASIC21.14■□□□□ 0.97
VTA1Q9NP79 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 MIR3180-1-201ENST00000580374 94 ntBASIC21.14■□□□□ 0.97
VTA1Q9NP79 MIR3180-3-201ENST00000584616 94 ntBASIC21.14■□□□□ 0.97
VTA1Q9NP79 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VTA1Q9NP79 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.14■□□□□ 0.97
VTA1Q9NP79 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms