Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 Z82202.1-201ENST00000623446 1880 ntBASIC16.61■□□□□ 0.25
LIME1Q9H400 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LIME1Q9H400 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 HOMER2P1-201ENST00000455653 964 ntBASIC16.61■□□□□ 0.25
LIME1Q9H400 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.61■□□□□ 0.25
LIME1Q9H400 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.61■□□□□ 0.25
LIME1Q9H400 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
LIME1Q9H400 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.61■□□□□ 0.25
LIME1Q9H400 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
LIME1Q9H400 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.61■□□□□ 0.25
LIME1Q9H400 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.61■□□□□ 0.25
LIME1Q9H400 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LIME1Q9H400 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIME1Q9H400 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.61■□□□□ 0.25
LIME1Q9H400 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LIME1Q9H400 KRT16P6-202ENST00000425692 1426 ntBASIC16.61■□□□□ 0.25
LIME1Q9H400 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.6■□□□□ 0.25
LIME1Q9H400 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
LIME1Q9H400 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.6■□□□□ 0.25
LIME1Q9H400 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.6■□□□□ 0.25
LIME1Q9H400 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LIME1Q9H400 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.6■□□□□ 0.25
LIME1Q9H400 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.6■□□□□ 0.25
LIME1Q9H400 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.6■□□□□ 0.25
LIME1Q9H400 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.6■□□□□ 0.25
LIME1Q9H400 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.6■□□□□ 0.25
LIME1Q9H400 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LIME1Q9H400 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.6■□□□□ 0.25
LIME1Q9H400 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIME1Q9H400 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.59■□□□□ 0.25
LIME1Q9H400 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.59■□□□□ 0.25
LIME1Q9H400 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LIME1Q9H400 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIME1Q9H400 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LIME1Q9H400 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.59■□□□□ 0.25
LIME1Q9H400 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.59■□□□□ 0.25
LIME1Q9H400 TSPY17P-201ENST00000450329 467 ntBASIC16.59■□□□□ 0.25
LIME1Q9H400 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.59■□□□□ 0.25
LIME1Q9H400 PRSS44-201ENST00000515154 1146 ntBASIC16.59■□□□□ 0.25
LIME1Q9H400 AL353719.1-201ENST00000566847 864 ntBASIC16.59■□□□□ 0.25
LIME1Q9H400 AC069148.1-201ENST00000608741 768 ntBASIC16.59■□□□□ 0.25
LIME1Q9H400 AL031432.5-201ENST00000641059 760 ntBASIC16.59■□□□□ 0.25
LIME1Q9H400 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.59■□□□□ 0.25
LIME1Q9H400 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LIME1Q9H400 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.59■□□□□ 0.25
LIME1Q9H400 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.59■□□□□ 0.25
LIME1Q9H400 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.59■□□□□ 0.25
LIME1Q9H400 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
LIME1Q9H400 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
LIME1Q9H400 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIME1Q9H400 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC16.58■□□□□ 0.25
LIME1Q9H400 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.58■□□□□ 0.25
LIME1Q9H400 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.58■□□□□ 0.25
LIME1Q9H400 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LIME1Q9H400 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.58■□□□□ 0.24
LIME1Q9H400 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.58■□□□□ 0.24
LIME1Q9H400 Z85996.1-201ENST00000494644 937 ntBASIC16.58■□□□□ 0.24
LIME1Q9H400 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms