Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NUCKS1Q9H1E3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
NUCKS1Q9H1E3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUCKS1Q9H1E3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 AC005082.1-201ENST00000413042 2259 ntBASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 AC124016.1-201ENST00000609552 612 ntBASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 FAM197Y4-202ENST00000622692 608 ntBASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 HLA-A-209ENST00000638375 975 ntBASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUCKS1Q9H1E3 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.52■□□□□ 0.87
NUCKS1Q9H1E3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
NUCKS1Q9H1E3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.52■□□□□ 0.87
NUCKS1Q9H1E3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 KRASP1-201ENST00000407852 552 ntBASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 TSPY23P-201ENST00000440136 739 ntBASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUCKS1Q9H1E3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUCKS1Q9H1E3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUCKS1Q9H1E3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUCKS1Q9H1E3 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms