Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 AC142381.4-202ENST00000563973 229 ntBASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM54Q9BYV2 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 AL135905.2-201ENST00000584934 1404 ntBASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM54Q9BYV2 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 CROCCP3-202ENST00000420820 1947 ntBASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 AC073195.1-201ENST00000607241 877 ntBASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM54Q9BYV2 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms