Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 BICD1-207ENST00000551848 1962 ntBASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AC004264.1-201ENST00000608354 794 ntBASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AL133373.2-201ENST00000623187 2828 ntBASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AC126763.1-201ENST00000552015 2118 ntBASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4AQ8WYN0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 AL023875.1-201ENST00000640777 796 ntBASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4AQ8WYN0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 AL354751.1-201ENST00000412768 1863 ntBASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms