Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.43■□□□□ 0.54
LMX1AQ8TE12 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.43■□□□□ 0.54
LMX1AQ8TE12 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.42■□□□□ 0.54
LMX1AQ8TE12 HCG4P8-203ENST00000443049 980 ntBASIC18.42■□□□□ 0.54
LMX1AQ8TE12 AC092597.1-201ENST00000487352 616 ntBASIC18.42■□□□□ 0.54
LMX1AQ8TE12 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LMX1AQ8TE12 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 HBZP1-201ENST00000354915 429 ntBASIC18.41■□□□□ 0.54
LMX1AQ8TE12 KRT18P48-201ENST00000434763 852 ntBASIC18.41■□□□□ 0.54
LMX1AQ8TE12 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LMX1AQ8TE12 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.4■□□□□ 0.54
LMX1AQ8TE12 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms