Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 AC067852.2-201ENST00000590513 2313 ntBASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ZNF540Q8NDQ6 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 IRX1P1-201ENST00000438849 1838 ntBASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 AC093787.1-201ENST00000450396 207 ntBASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 RNA5SP413-201ENST00000516373 109 ntBASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.52■□□□□ 0.4
ZNF540Q8NDQ6 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZNF540Q8NDQ6 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 POU5F1P3-201ENST00000428824 1078 ntBASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 AC010980.2-201ENST00000587099 1412 ntBASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 ABALON-201ENST00000629058 1903 ntBASIC17.51■□□□□ 0.39
ZNF540Q8NDQ6 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZNF540Q8NDQ6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms