Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 OR2I1P-207ENST00000453522 948 ntBASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 AC005052.1-201ENST00000625181 2492 ntBASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN3Q8NCR9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN3Q8NCR9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 AP004607.4-201ENST00000530158 1459 ntBASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 AC009299.2-201ENST00000482477 511 ntBASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN3Q8NCR9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms